Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sare_0263 |
Symbol | |
ID | 5705278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora arenicola CNS-205 |
Kingdom | Bacteria |
Replicon accession | NC_009953 |
Strand | - |
Start bp | 290768 |
End bp | 292522 |
Gene Length | 1755 bp |
Protein Length | 584 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641269791 |
Product | 2-isopropylmalate synthase |
Protein accession | YP_001535186 |
Protein GI | 159035933 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00953684 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000495197 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCCCACC CTGCTGTCAC CCCTGACGCT GAGACTGATC CGATCGCCCG GCAACAGCCC AGCCGCATGC CGTACCACCG CTACCAGCCC TACCAGCAGC AGTTCCGCAC CGACCTACCG GACCGCAGCT GGCCGAACCG GCGCGTCGAG ACCGCGCCGC GCTGGTGCGC GGTCGACCTG CGGGACGGCA ACCAGGCTCT CATCGACCCG ATGTCGCCCG AGCGCAAGCG ACGGATGTTC CAGCTCCTGG TACAGCTGGG CTACAAGGAA ATCGAGGTGG GCTTCCCGTC GGCGAGCCAG TCCGACTTCG ACTTCGTCCG ACAGCTCATC GAGCAGGACC TGATCCCCGA CGACGTCACC ATCCAGGTGC TGACCCAGTG CCGGGAGCAC CTGATCGACC GCACCTTCGC GGCGCTGCGG GGCGCGAAGC GGGCGATCGT GCACTTCTAC AACTCGACGT CGACGCTGCA ACGCCGGGTG GTCTTCGGAC TGGACCGGGA CGGCATCACC GACATCGCGA CCACCGGCGC CCGGCTCTGC CAGAAGTACG CGGAGATCCA CACCCCGGAC ACGGACATCC ACTACGAGTA CTCGCCCGAG TCGTACACCG GCACGGAACT GGACTACGCC CTGGAGGTCT GCGCAAAGGT GATCGAGGTC GTCGACCCGA CGCCCGACCA CCGACTGATC GTCAACCTGC CGGCCACCGT CGAGATGGCG ATGCCGAACG TGTACGCCGA CTCGATCGAG TGGATGCACC GACACCTGCC CCGGCGGGAC AGTCTGGTGC TCAGCCTGCA CCCGCACAAC GACCGCGGCA CCGGGGTGGC CGCCGCCGAA CTGGGCCTGC TGGCCGGAGC GGACCGAATC GAGGGCTGCC TGTTCGGCAA CGGCGAGCGC ACCGGCAACG TGGACCTGGT GACCCTGGGC CTGAACCTCT TCTCCCAGGG CATCGACCCG ATGATCGATT TTTCGAACAT CGACGAGATC AAACGTACGG TCGAATACTG CAACCAGCTA CCCGTGCACG AGCGCCACCC GTACGTCGGG GACCTGGTCT ACACCGCCTT CTCCGGCTCC CACCAGGACG CGATCAAGAA GGGATTCGAC GCCCTGTCGG CAGACGCCGC GACCGCCGGC GTTCCCGTCG AGAAGCACTC GTGGGCGGTG CCGTACCTGC CGATCGACCC GAAGGACCTG GGCCGCACCT ACGAGGCCGT CATCCGGGTC AACTCGCAGT CCGGCAAGGG CGGCGTCGCG TACGTCATGC AGACCGAGCA CCAGCTGGAC CTGCCCCGCC GGCTCCAGAT CGAGTTCTCC GGCGTGGTCC AGCAGGTCAC CGACAACGAC GGCGGCGAAG TCGACCCACA GACCATGTGG GAGATCTTCG CCGGACAGTA CCTGCTCGAC CACCAGACGA ACCCCTCGGT CACGCTGACC GACTACACGC TCGCCACTGT CGACGGCAAG GTCGAGTTCG AGGCGGTCGT CGGGTACGAC GGCGAACGGC ACACCGTCAC CGCGGTCGGC AACGGCCCGG TCGACGCGTA CGTCAACGCA CTACAGTCAC TCGGAGTCAA CGTCCGCGTC CTCGACTACC ACGAACACGC CCTCTCCTCC GGCGGGGACG CCCAGGCCGC CGCGTACGTG GAATGCGAGG TGGACGGCCG CACGGTGTGG GGCGCCGGCG TGGACGCCAA CATCGTCACC GCCACCATCA GGGCGGTGAC CAGCGCCGTC AACCGCACCC GCTGA
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Protein sequence | MAHPAVTPDA ETDPIARQQP SRMPYHRYQP YQQQFRTDLP DRSWPNRRVE TAPRWCAVDL RDGNQALIDP MSPERKRRMF QLLVQLGYKE IEVGFPSASQ SDFDFVRQLI EQDLIPDDVT IQVLTQCREH LIDRTFAALR GAKRAIVHFY NSTSTLQRRV VFGLDRDGIT DIATTGARLC QKYAEIHTPD TDIHYEYSPE SYTGTELDYA LEVCAKVIEV VDPTPDHRLI VNLPATVEMA MPNVYADSIE WMHRHLPRRD SLVLSLHPHN DRGTGVAAAE LGLLAGADRI EGCLFGNGER TGNVDLVTLG LNLFSQGIDP MIDFSNIDEI KRTVEYCNQL PVHERHPYVG DLVYTAFSGS HQDAIKKGFD ALSADAATAG VPVEKHSWAV PYLPIDPKDL GRTYEAVIRV NSQSGKGGVA YVMQTEHQLD LPRRLQIEFS GVVQQVTDND GGEVDPQTMW EIFAGQYLLD HQTNPSVTLT DYTLATVDGK VEFEAVVGYD GERHTVTAVG NGPVDAYVNA LQSLGVNVRV LDYHEHALSS GGDAQAAAYV ECEVDGRTVW GAGVDANIVT ATIRAVTSAV NRTR
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