| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_0126 |
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| Symbol | |
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| ID | 5706732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | + |
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| Start bp | 138985 |
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| End bp | 140544 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641269652 |
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| Product | spermidine synthase |
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| Protein accession | YP_001535052 |
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| Protein GI | 159035799 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.597506 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000389155 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGACGGCGG ACGCGCCGAT CCGCTGGCGG CCGGCTCGCG CCGCCGTGCT GGCGGCGGTG
TTCGTCTGCG CGGCCTGCGG CCTGGTCTAC GAGCTGGCCC TGGTCGCGCT CGGCAGCTAC
CTGATCGGCG ACACGGTCGG GCAGGCGTCG ATCGTGCTCG GGGTCATGGT CTTCGCGATG
GGTGTGGGAG CCCTCGCCGC GAAGCCGTTG CAGTCGCGGG CCGCCGCCAT GTTCGCCGCG
ATCGAGCTGG CCCTGGCGCT GCTCGGTGGC CTGTCGGTAC TCGGCCTCTA CGCGGCGTTC
GCCTGGCTGA ACCTGTATGT GCCGGCCCTG GTCGGTACCG CCTTCGTGCT CGGACTGTTG
ATCGGCGCGG AGATCCCGCT GCTGATGGTG CTGCTGCAAC GGATCCGCCA GCAGGCGGCC
GGCAGTGCGG TCGCCGACCT GTTCGCCGCC GACTACGTCG GTGCCCTACT CGGTGGTCTG
GCCTTCCCGT TTCTGCTGCT GCCGCTTTTC GGTCAGCTCA AGGGCGCGCT GGTGGTCGGC
GCGGTGAACG CTGTCGCCGG CCTGGCGTTG GTCTTCACCG TCTTTCGGCG GGAACTGAGC
GGCCGGGCGC GTACGGCACT GACCGCCGGC TCCGTACTGG TCGCTCTCTG CCTCGGGTAC
GCGTGGCTGA CCGCCCACGA CTTCGAGGTG ACCGCCCGGC AGCAGCTCTA TCGCGACCCG
GTGGTGCACG CGGAGCGCAG CCGCTACCAA GAGATCGTCC TGACCCGGTC GGTGGCCGAG
CCCGGCGGCG GGACCGACCT GCGCCTGTTC CTCAATGGTG ACCTCCAGTT CAGTTCAGTC
GACGAGCATC GATACCATGA GGCACTGGTG CATCCGGCGC TCGCTGGCGC GCGTGGTGAG
GTGCTGGTGC TCGGCGCCGG GGATGGGCTC GCGGCCCGGG AACTGCTGCG CTACCCGGAC
GTCCGTCGGA TCACCGTGGT CGACCTGGAT TCGGCGGTGG TGGCGTTGGC CCGCACAGAG
CCGCGGTTGC AGCGGCTCAA CGGTGGGTCG CTCGACGATC CCCGGGTGCG GGTCCTGCAT
GCCGACGCGT TCGGGTGGTT GCGGACCACC GCCGAGCGGT TCGACGTGGT GATCGCCGAC
CTCCCCGACC CGGACGAGAC GGCTACCGCG AAGCTCTACA CCGTAGAGTT CTACACGTTG
GTCCGCAACG TGCTGGCCAC GGAGGGCCGG CTGGTCGTGC AGGCCGGTTC CCCGTACTTC
GCGCCCCGGT CCTACTGGTC CATCGAGGCC TCGCTGCGAG GAGCCGGGTT CGCCACCACG
CCGTACCACG TGGACGTCCC CTCCTTCGGT GACTGGGGCT TCCTGCTCGC CGCGCCCGGC
GCGATCCCGC CCACGCTGGC CCTGCCGAGC GACGCACCAG CGCTGCGTTT TCTTGACCCG
GCCACGCTGG CCGCCGCCGG GGTCTTCCCG CCGGACCGGC GCCGGATCGA TGTGCCGGAA
TCGACGCTGC TGCGACCCCG AGTGCTCGAG TTCGCGCGTG CCGAATGGCG CGGGTACTGA
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| Protein sequence | MTADAPIRWR PARAAVLAAV FVCAACGLVY ELALVALGSY LIGDTVGQAS IVLGVMVFAM
GVGALAAKPL QSRAAAMFAA IELALALLGG LSVLGLYAAF AWLNLYVPAL VGTAFVLGLL
IGAEIPLLMV LLQRIRQQAA GSAVADLFAA DYVGALLGGL AFPFLLLPLF GQLKGALVVG
AVNAVAGLAL VFTVFRRELS GRARTALTAG SVLVALCLGY AWLTAHDFEV TARQQLYRDP
VVHAERSRYQ EIVLTRSVAE PGGGTDLRLF LNGDLQFSSV DEHRYHEALV HPALAGARGE
VLVLGAGDGL AARELLRYPD VRRITVVDLD SAVVALARTE PRLQRLNGGS LDDPRVRVLH
ADAFGWLRTT AERFDVVIAD LPDPDETATA KLYTVEFYTL VRNVLATEGR LVVQAGSPYF
APRSYWSIEA SLRGAGFATT PYHVDVPSFG DWGFLLAAPG AIPPTLALPS DAPALRFLDP
ATLAAAGVFP PDRRRIDVPE STLLRPRVLE FARAEWRGY
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