Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3566 |
Symbol | ppiC |
ID | 5713797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 3753294 |
End bp | 3754136 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641269495 |
Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
Protein accession | YP_001534900 |
Protein GI | 159046106 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACATCA TTCGGAAGCC CCTCGCCAGG CTCGCGCTTG GCCTGACCTT GCTGAGCCCC GTGGCCGTCC AGGCCCAGGA TGCCGACACG GTTCTGGCAA CCGTCGGCGG CGAGGAAATC ACCCTCGGCC ACCTGATCGC TGTGGCAAGC AGTCTGCCCA CGCAATTCCA GCAACTGGCC GACGATCGGC TGTATTCCGG CCTTCTGGAG CAGATGATCC GCCAGGTGGC CCTGGCGCAG TCCATGGGCG ACTCGCTCTC CAAGGAGCTG GAGCTGTCGC TGGAAAGCCA ACGCTGGGCC CTGATGGCGA ATTCGATCAT CGACGGCGCC ATCGAGGCCG CCGTGACCGA GGAGAGCGTG CAGGCCTTGT ATGACGCGGA ATTCGGTAAC ATCGAGCCGG AGAAAGAATT CAACGCCTCT CACATCCTGG TGGAAACCGA GGAGGAGGCC CAGGCACTGG TGACCGAACT CGAAGGCGGT GCCGATTTCG CGGAACTGGC AAGAGCACGG TCCGTCGGCC CGTCGGGACC CAATGGCGGG GAACTTGGCT GGTTCGGGCC GGGGATGATG GTGGCCCCGT TCGAAATGGC CGTCATCAGG ATGGAACCCG GGACCGTATC CGAGCCGGTG GAAACGCAAT TCGGCTGGCA CGTGATCCGG CTGAATGACA TCCGCGACTC TGCCGCCCAA CCCCTCGAAG AGGTACGGGG CAGGCTCGAA GAGCGCTTGA GTGAAGAGGC GGCCCAGGAA GTCGTGGACT CGCTGGTCGC GGCAACCGAG ATCACCCGGT CCGAGGCGGA GATCGACCCG GCCCTGATCC GCGACACTTC CCTCCTGGAC TGA
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Protein sequence | MNIIRKPLAR LALGLTLLSP VAVQAQDADT VLATVGGEEI TLGHLIAVAS SLPTQFQQLA DDRLYSGLLE QMIRQVALAQ SMGDSLSKEL ELSLESQRWA LMANSIIDGA IEAAVTEESV QALYDAEFGN IEPEKEFNAS HILVETEEEA QALVTELEGG ADFAELARAR SVGPSGPNGG ELGWFGPGMM VAPFEMAVIR MEPGTVSEPV ETQFGWHVIR LNDIRDSAAQ PLEEVRGRLE ERLSEEAAQE VVDSLVAATE ITRSEAEIDP ALIRDTSLLD
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