| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3561 |
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| Symbol | nusA |
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| ID | 5713792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3746464 |
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| End bp | 3748098 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641269490 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_001534895 |
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| Protein GI | 159046101 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATCA CCTCTGCCAA CCAGTTGGAG CTGTTGCAGA CCGCCGAGGC GGTGGCGCGC
GAGAAGATGA TCGACCCGGG CCTCGTGATC GAGGCCATGG AAGAGAGCCT CGCCCGTGCC
GCCAAGTCGC GCTACGGCTC GGAGATGGAC ATCCGTGTGT CGATCGACCG TAAGACCGGC
GTGGCGACCT TCACCCGCGT GCGCACCGTG GTCGAGGACG AGGAGCTGGA GAATTACCAG
GCCGAGCTGA CCGTGGAGCA GGCCAAGCCC TATCTCGACG ATCCCAAGGT CGGTGACACC
ATCGTCGACC AGGTGCCGCC GGTGGAGATG GGCCGGATCG CCGCCCAGTC GGCCAAACAG
GTGATCCTGC AGAAGGTCCG CGAGGCCGAA CGCGACCGCC AGTACGAGGA ATTCAAGGAC
CGCGCGGGCA CGATCATCAA CGGGGTCGTC AAGCGCGAGG AATACGGCAA TGTCATCGTC
GACATCGGCC GGGGCGAGGG CGTGCTGCGC CGCAACGAGA AGATCGGGCG CGAGAGCTAC
CGGCCCAATG ACCGCATCCG CTGCTACATC AAGGATGTGC GCCGCGAAGT GCGCGGGCCG
CAGATCTTCC TCAGCCGCAC CGCGCCGGAA TTCATGGCCG AGCTGTTCAA GATGGAAGTG
CCGGAAATCT ATGACGGCAT CATCGAGATC AAGGCCGTGG CCCGGGACCC GGGCAGCCGC
GCGAAGATCG CCGTGATCTC CTATGACGGG TCCATCGACC CGGTGGGCGC CTGCGTCGGT
ATGCGCGGCT CCCGCGTGCA GGCGGTGGTC AACGAGCTTC AGGGCGAGAA GATCGACATC
ATCCCGTGGA ACGAGGACCA GCCGACCTTC CTGGTGAACG CATTGCAGCC CGCCGAGGTG
AGCAAGGTGG TCCTGGACGA GGATGCGGAA CGGATCGAGG TCGTGGTCCC GGACGAGCAG
CTCAGCCTCG CCATCGGGCG GCGCGGGCAG AACGTGCGTC TGGCCAGCCA GCTGACCGGG
CTGGACATCG ACATCATGAC CGAGGCGCAG GAATCGGAGC GTCGTCAGGC CGAGTTCGCC
GAGCGCACCA ACATGTTCGT CGAAGCGCTG GACGTGGACG AGGTGCTGGC GCAGCTGCTG
GTCTCCGAAG GGTTCACCAA CCTCGAAGAG GTGGCCTATG TCGAGCAGGA AGAGCTGCTG
GTGATCGACG GGTTCGACGA GGACACCGCC GAGGAGCTGC AGACCCGGGC CCGCGAATTC
CTCGAAGAGC AGGCCAAGAA GGCCCTGGAG CGGGCGCGCG AGATGGGCGT CGAGGACAGC
CTGGTTGAAT TCGAGGGCCT GACGCCCCAA ATGCTGGAAG CCCTCGCCGC AGACGGGGTC
AAGACGCTCG AAGACTTCGC GACCTGTGCC GACTGGGAGC TGGCCGGCGG CTGGACCACG
GTCGATGGCG AGCGCGTGAA GGACGAAGGC GTGCTGGAGA AGTTCGACGT GTCCCTCGAA
GAGGCGCAGC TTCTGGTGAT GACGGCACGC GTGCAGCTCG GCTGGGTCAA CCCGGAGGAC
CTGGAGATCG AGGAAGACGC CGATCCCGAG GCCGAAGGTG AAGCCGAGAC CGAAGAGGGG
GCGCCGCAGG TCTGA
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| Protein sequence | MAITSANQLE LLQTAEAVAR EKMIDPGLVI EAMEESLARA AKSRYGSEMD IRVSIDRKTG
VATFTRVRTV VEDEELENYQ AELTVEQAKP YLDDPKVGDT IVDQVPPVEM GRIAAQSAKQ
VILQKVREAE RDRQYEEFKD RAGTIINGVV KREEYGNVIV DIGRGEGVLR RNEKIGRESY
RPNDRIRCYI KDVRREVRGP QIFLSRTAPE FMAELFKMEV PEIYDGIIEI KAVARDPGSR
AKIAVISYDG SIDPVGACVG MRGSRVQAVV NELQGEKIDI IPWNEDQPTF LVNALQPAEV
SKVVLDEDAE RIEVVVPDEQ LSLAIGRRGQ NVRLASQLTG LDIDIMTEAQ ESERRQAEFA
ERTNMFVEAL DVDEVLAQLL VSEGFTNLEE VAYVEQEELL VIDGFDEDTA EELQTRAREF
LEEQAKKALE RAREMGVEDS LVEFEGLTPQ MLEALAADGV KTLEDFATCA DWELAGGWTT
VDGERVKDEG VLEKFDVSLE EAQLLVMTAR VQLGWVNPED LEIEEDADPE AEGEAETEEG
APQV
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