Gene Dshi_3553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3553 
Symbolacs 
ID5713784 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3736896 
End bp3738872 
Gene Length1977 bp 
Protein Length658 aa 
Translation table11 
GC content65% 
IMG OID641269482 
Productacetyl-coenzyme A synthetase 
Protein accessionYP_001534887 
Protein GI159046093 
COG category[I] Lipid transport and metabolism 
COG ID[COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 
TIGRFAM ID[TIGR02188] acetate--CoA ligase 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAAC AGAAACCCAT CGCATCGGGC GAGATCATCA AAGCGGTATC GGAAGAGTTC 
GCCGCGAACG CCCATATCGA TTCATCGAAG TATTCTGAGA TGTATGCGGC GTCGGTTTCG
GATCCTGAGG GGTTTTGGGG GGAGCATGGG CGGTCTTTGG ACTGGATCAA GCCCTACACG
AAGGTGAAGG ACACCTCGTT CGCCCATGAC GACGTGCATG TGCGCTGGTT CGAGGATGGC
ACGCTGAACG TGGCGGCCAA TTGCATCGAC CGGCATCTGG CGACCCGGGG CGATCAGACC
GCGATCATTT TCGAGCCGGA CGATCCCGCC GAGCCTGCCC AGCACATCAC CTATCGCGAG
TTGCACCGGC AGGTCTGCAA GCTGTCCAAC GTGCTGGAGG ATCTCGGCGT GCGCAAGGGC
GACCGGGTGA TCCTTTACAT GCCGATGATC CCCGAGGCGG CCTATGCGAT GCTGGCCTGT
GCCCGGATCG GCGCGATCCA TTCCATTGTT TTCGCGGGCT TTTCGCCCGA TGCCCTCTCG
GCGCGGATCA ACGGGGCCGA TGCCAGGCTG CTGATCACCG CGGACTATGC CCCCCGGGGC
GGGCGCCAGA CGCCGCTGAA ATCCAACGCC GACGCGGCGC TCTTGCACAC CCGCGACGAC
GTCAAGATGC TGGTGGTCAA GCGCACCGGC GGGCAGACCA CCTGGGTGGA CGGGCGCGAT
TTCGACTATC ACGAGCTGAT GCTGGAGGCC GACGAGGTCC AGCACCCGGT CGAGGTGGAG
GCCGAGCATC CGCTCTTCAT CCTCTATACC TCGGGCTCCA CGGGCCAGCC CAAGGGGGTG
GTGCATTCCT CGGGGGGCTA CCTGCTCTAT GCGGCGATGA CCCAGAAATA CGTCTTCGAC
GTGCATGAGG GCGATGTCTA CTGGTGCACG GCGGATGTGG GCTGGGTGAC GGGGCACAGC
TATATCGTCT ACGGGCCGCT GGCCAATGGC GGCACCACGG TGATGTTCGA GGGCGTGCCG
ACCTACCCCG ATGCCTCCCG CTTCTGGCAG GTCTGCGACA AGCACAAGGT CACCCAGTTC
TACACCGCCC CCACCGCGAT CCGGGCGCTG ATGGCCAAGG GGCCGGAATT CGTCGAGACA
TGCGACCTGA GCAGCCTGCG CGTCCTCGGC ACCGTGGGCG AGCCGATCAA CCCCGAGGCC
TGGAACTGGT ACAACGACCT GGTCGGCAAG GGCCGCTGCC CGATCGTCGA CACCTGGTGG
CAGACCGAGA CCGGCGGGCA CCTGCTGACG CCGCTGCCCG GCGCGATCGC GACCAAGCCG
GGCTCGGCGA CCCTGCCGTT CTTCGGGGTG CAGCCGGTGG TGCTCGACCC CCATTCGGGC
GCCGAGATCA CCGAGACCGA ATGCGAGGGG GTGCTGTGCC TCAAGGACAG CTGGCCGGGC
CAGATGCGCA CGGTCTACGG CGACCACGAG CGGTTCGTGA AGACCTATTT CTCGGACTAC
AAGGGGTATT ACTTCTCGGG CGATGGCTGC CGCCGGGACG CGGACGGGTA TTACTGGATC
ACCGGGCGGG TCGATGACGT GATCAACGTG TCGGGCCACC GGATGGGCAC AGCCGAGGTG
GAATCGGCGC TGGTGGCCCA TGCCAAGGTC GCCGAGGCCG CGGTCGTGGG CTATCCGCAC
GACATCAAGG GCCAGGGCAT CTATTGCTAC GTCACCCTGA TGAATGGCGA GGAGCCCTCC
GAGGAGCTGC GCAAGGAGCT GCGCACCTGG GTGCGCACCG AGATCGGCCC GATCGCCGCC
CCGGACCTGA TCCAGTGGGC CCCCGGCCTG CCGAAAACCC GGTCGGGCAA GATCATGCGC
CGCATTCTGC GCAAGATCGC CGAAGACGAC TTCGGCGCCT TGGGCGACAC CTCAACCCTC
GCAGACCCCT CCGTCGTCGA AGACCTCATC GAAAACAGAA TGAACAAGAA AGGATGA
 
Protein sequence
MTEQKPIASG EIIKAVSEEF AANAHIDSSK YSEMYAASVS DPEGFWGEHG RSLDWIKPYT 
KVKDTSFAHD DVHVRWFEDG TLNVAANCID RHLATRGDQT AIIFEPDDPA EPAQHITYRE
LHRQVCKLSN VLEDLGVRKG DRVILYMPMI PEAAYAMLAC ARIGAIHSIV FAGFSPDALS
ARINGADARL LITADYAPRG GRQTPLKSNA DAALLHTRDD VKMLVVKRTG GQTTWVDGRD
FDYHELMLEA DEVQHPVEVE AEHPLFILYT SGSTGQPKGV VHSSGGYLLY AAMTQKYVFD
VHEGDVYWCT ADVGWVTGHS YIVYGPLANG GTTVMFEGVP TYPDASRFWQ VCDKHKVTQF
YTAPTAIRAL MAKGPEFVET CDLSSLRVLG TVGEPINPEA WNWYNDLVGK GRCPIVDTWW
QTETGGHLLT PLPGAIATKP GSATLPFFGV QPVVLDPHSG AEITETECEG VLCLKDSWPG
QMRTVYGDHE RFVKTYFSDY KGYYFSGDGC RRDADGYYWI TGRVDDVINV SGHRMGTAEV
ESALVAHAKV AEAAVVGYPH DIKGQGIYCY VTLMNGEEPS EELRKELRTW VRTEIGPIAA
PDLIQWAPGL PKTRSGKIMR RILRKIAEDD FGALGDTSTL ADPSVVEDLI ENRMNKKG