| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3498 |
|---|
| Symbol | hemH |
|---|
| ID | 5713729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3678932 |
|---|
| End bp | 3680020 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641269427 |
|---|
| Product | ferrochelatase |
|---|
| Protein accession | YP_001534832 |
|---|
| Protein GI | 159046038 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0276] Protoheme ferro-lyase (ferrochelatase) |
|---|
| TIGRFAM ID | [TIGR00109] ferrochelatase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.440479 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.808064 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACA GAGGCACAGA ACCGATGAAC ATGATGTCCA AGACGACCTC GTCCCACCTG
CCCGGTGATC ACCCGCCGGT CAATTTCGGC AAGGTCGGCG TACTGCTGGC CAATCTCGGG
ACGCCGGACA ATTATGACTA TTGGTCGATG CGGCGGTATC TGAATGAATT CCTGTCCGAC
AAGCGGGTGA TCGATTACAG CCCCTGGATC TGGCAACCGC TGTTGCAGCT GGTGATCCTG
ACCAAGCGGC CCTTCAGCTC GGGTGCGGCC TACAAGTCGA TCTGGAACGA AGAGGCGGGG
GAGAGCCCGC TGATGACCAT CACCAAGGAT CAGACCGCCA AGATGAAGGC GGCGATGCAG
GCTCGGTTCG GCGATGACGT GGTGGTGGAT TTCTGCATGC GCTACGGCAA TCCGTCCACC
AAGTCGAAGG TGGAGGAATT GCAGAAGCAG GGCTGCCAGA AGATCCTGTT CTTCCCGCTC
TATCCGCAAT ATGCGGGCGC GACCTCGGCC ACGGCCTGCG ACCAGTTCTT CCGGTCGCTG
GAGCATATCA AGTGGCAGCC GATCGTGCGC ACGGTGGAGC CGTATTTCGA GCATCCGATG
TATATCGAGG CGCTGGCCCA GTCCGTGGAG CGCGCCTATG CGGACATGGA AACCCGCCCC
GACGTGCTGG TCGCGTCCTA TCACGGGGTG CCGAAGCGGT ACCTGATGGA GGGTGACCCG
TACCACTGCC AGTGTCAGAA GACCTCGCGC CTGCTCAAGG AACGGCTGGG CTGGCCGGAG
GGCGAGATCG TGACCACCTT CCAGAGCCGG TTCGGCCCGG AGGAATGGCT CAAGCCCTAC
ACGGTCGAAG AGGTCGCGCG CCTGGCCGAG ACCGGCAAGA AGAAGATCGC GGTGATCGCG
CCGGCATTTT CCGCCGACTG CATCGAAACG CTCGAAGAGA TCAACGAAGA GATCAAGGAG
AGCTTCGAGG AGGCGGGCGG CGAAGAGTTC ACCTATATCC CCTGCCTGAA TGACGACGAC
GCCCATATCG CGGCGCTGGC CAAGGTCGTG GAAGAAAACC TTGCGGGCTG GATCGCGCCG
AAGGGCTGA
|
|---|
| Protein sequence | MADRGTEPMN MMSKTTSSHL PGDHPPVNFG KVGVLLANLG TPDNYDYWSM RRYLNEFLSD
KRVIDYSPWI WQPLLQLVIL TKRPFSSGAA YKSIWNEEAG ESPLMTITKD QTAKMKAAMQ
ARFGDDVVVD FCMRYGNPST KSKVEELQKQ GCQKILFFPL YPQYAGATSA TACDQFFRSL
EHIKWQPIVR TVEPYFEHPM YIEALAQSVE RAYADMETRP DVLVASYHGV PKRYLMEGDP
YHCQCQKTSR LLKERLGWPE GEIVTTFQSR FGPEEWLKPY TVEEVARLAE TGKKKIAVIA
PAFSADCIET LEEINEEIKE SFEEAGGEEF TYIPCLNDDD AHIAALAKVV EENLAGWIAP
KG
|
|---|
| |