| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3477 |
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| Symbol | pcaH |
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| ID | 5712535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3660122 |
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| End bp | 3660859 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641269406 |
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| Product | protocatechuate 3,4-dioxygenase beta chain |
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| Protein accession | YP_001534811 |
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| Protein GI | 159046017 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | [TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAGATG CACCGAAACC CGGCGGGTAC TTCCCGCGCG ACCGGGGCTG GCATCCGCCC
GCGCTCAGCC CCGCGTACAA GACCACGGTG AAACGGGCGC CCAGCTTGGC GCCCCTGTCT
TTCCCCACCA GCCTCGGCGA AGAGACCGGT CCGGTATTCG GGCATGAGAC GCTCGGCCCG
CTCGACGGCG ATCTGATCCA CAACTTCGCG GGTCTTGAGA ATCCCGCCAT CGGGCCGCGC
ATCGTGGTTC ATGGCCGGGT GCTGGACGAG CGCGCGCGCC CGGTGCCTGG GGCGCTGATC
GAGATCTGGC AGGCCAATGC AGGCGGACGC TACCGCCACC GGAACGAAAG CTACCTCGCC
CCGTTGGACC CGCATTTCGG CGGATGTGGG CGCGTGATTT CGCGCGAGGA TGGGTCCTAC
GAGTTTCGGA CGGTGATGCC CGGACCCTAC CCTTGGCCCA ATGGTATGAA CGACTGGCGC
CCGGCCCATA TCCATCTGTC GATCTTCGGG CCCGCATTCG CCCAGCGGCT GGTGACACAG
ATGTATTTCG AGGGCGATCC GCTGATCTGG CTGTGCCCGA TCGTGGGTGC CATTCCCTCG
CGGGCAGCGA TCGAGAGCCT GATCGCGCCG GTCGACAGCG CCCGGAACAT CCCCATGGAC
GCGCGCGCCT ACAAGTTCGA CATCGTGCTG CGCGGGCGAC GCCAGACCAT GTTCGAAAAC
CGGAAGGACG GGATGTGA
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| Protein sequence | MTDAPKPGGY FPRDRGWHPP ALSPAYKTTV KRAPSLAPLS FPTSLGEETG PVFGHETLGP
LDGDLIHNFA GLENPAIGPR IVVHGRVLDE RARPVPGALI EIWQANAGGR YRHRNESYLA
PLDPHFGGCG RVISREDGSY EFRTVMPGPY PWPNGMNDWR PAHIHLSIFG PAFAQRLVTQ
MYFEGDPLIW LCPIVGAIPS RAAIESLIAP VDSARNIPMD ARAYKFDIVL RGRRQTMFEN
RKDGM
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