Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3466 |
Symbol | mutS |
ID | 5712524 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 3646135 |
End bp | 3648768 |
Gene Length | 2634 bp |
Protein Length | 877 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641269395 |
Product | DNA mismatch repair protein MutS |
Protein accession | YP_001534800 |
Protein GI | 159046006 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCAGCA AGACCGTGAC GCCGATGATG GCGCAGTACC TGGAGATCAA GCAGGATCAT GCGGATGCCC TGCTTTTCTA CCGGATGGGC GACTTCTACG AGATGTTCTT CGACGACGCG GTGGAGGCCG CGGCGGCACT GGACATCGCG CTTACCAAGC GTGGCAAGCA TGACGATGCG GACATTCCCA TGTGCGGCGT GCCCGTGCAT GCGGCGGAGG GTTATTTGCT CACACTGATC CGCAAGGGGT TTCGCGTCGC CGTCTGCGAA CAGATGGAGG ATCCGGCCGA AGCGAAAAAG CGCGGCTCCA AGTCCGTCGT GCGGCGGGAG GTCGTTCGGC TTGTGACCCC GGGCACCCTG ACCGAGGCGA GCCTGCTGGA GGCGCGGCGG CACAATTATC TGGCTGCCTT TGCCAAGGTG AGAGACGACT CCGCGCTGGC TTGGGTCGAT ATCTCCACTG GCGAGTTCCG GGTCATGGCC TGCCCCGCGG CCCGGCTGTC GGTGGACCTT GCGCGCCTCG CGCCGCGCGA GGTCTTGCTG GCCGAGGGCA ACGACCTGCG GTCGCTCGTC GAAGAACACG AGGCGGCGGC GACGGAGCTT GGGCGCGCCA GTTTCGACAG TACGGCCGCG GTGGACCGGC TGTGCCGGCT TTACGGCGTT GCCGACCTCG AGGCTTTTGG GAGTTTCGAA CGCGCGGACC TATCCGCGAT GGGTGCAATC GTCGGCTATC TGGAGTTGAC CCAAAAGGGC AAGCTGCCGC TACTGCGCAA ACCGGTGAAG GAACGGGCGC AGCATGGTTT GCAGATCGAC GCGGCGACTC GGCGAAATCT GGAGTTGACG CAATCACTGT CTGGGGGGCG GGAAGGTGCG CTGTTGACTG TGATCGACCG CACCGTCACG GCACAAGGCG CAAGGCTCCT GGCGCGGCGA CTGGCGAGCC CCTCTGCCGA TCTGTCGATC ATCCGGACAC GGCACGAGGG TGTCCGCTAT GCGCTCGAGG CGCCCGAGAT CCTCGACACC GTGCGCACCG CACTGCGGCA GGTGCCGGAT ATGGATCGGG CACTGTCCCG GTTGGCGCTC GACCGCGGCG GGCCACGGGA TCTGGCGGCG ATCCGAAACG GTCTCGCCCA GGCCGCAACG CTCGCCGAGG CTCTGCCGGA CGACGCCTTG CCCCCCCTCT GGGCCCAATC GAAGAGCCGG TTTTTCGGAC ATGACGCCCT GCGCGACCTG TTGGAGAAAG CCCTGATTGC CGAACCCCCG CTGCTAACGC GAGATGGTGG GTTCGTTGCC TCTGGCTACA ATGTCGACCT GGATGAAGCC CGGCAGCTGC GCGACGAGGG GCGCGGCGTG ATTGCCGGAA TGCAGGCGGA ATATGCCGAG GCAACCGGGA TCGCCTCCCT CAAGGTGAAG CACAACAACG TGCTGGGCTA TTTCATTGAA ACGACCGCCA CCCACGCGGA CAAGATGCTG TCCCCGCCCC TGTCGGACCG GTTCATCCAC CGCCAGACCA CCGCCAACGC CGTGCGCTTC ACCACCGTGG AGTTGTCCGA GATGGAGACC CGCATTCTCA ATGCCGGTGG CCGGGCGCTG GCGCTGGAAA AGTCGATCTT CGAAGAGTTG CGTCAGGCCG TGATCGTTGC GGCCGCCGAG CTGTCGGATT GCGCGCGGGC ATTGGCGGAA CTGGATGTGG TGACGGCCCT TGCGGTGCTG GCCCGCGACG AGGACTGGTG CGCGCCCAAG GTCGATGACA GCCGTGCCTT CGAAATCAGC GGCGGACGGC ACCCGGTAGT CGAGGCCGCG CTGCGCGCCA GTGGTACACC CTTCATCCGC AACGATTGCG ACTTGAGCGA AGGTGCTGCG CCGATCTGGT TGCTCACCGG GCCGAACATG GCGGGCAAAT CGACCTTCCT GCGCCAGAAC GCCCTGATCG CGATCCTAGC GCAGATGGGC AGCTACGTGC CCGCAACCGC GGCACGGATC GGGTTGGTCG CACAGGTTTT CTCCCGTGTT GGTGCGTCGG ATGATTTGGC GCGGGGGCGC TCGACCTTCA TGGTGGAAAT GGTGGAAACC GCCGCGATTC TGAACCAGGC CGGGGACCGA GCATTGGTCA TCCTTGACGA GATCGGGCGC GGAACGGCCA CCTATGACGG GCTGTCGATT GCCTGGGCGA CGCTCGAACA CCTGCACGGG GTGAACCGGT GTCGCGCCCT GTTCGCCACC CATTACCACG AAATGACCGG CCTTGCTGCG CAACTGTCCG GCGTGGAAAA CGCCACCGTG GCGGTCAAGG AGCATGATGG CGACGTGATC TTTCTGCACG AGGTGCGGCG CGGTGCGGCG GATCGATCCT ACGGTGTGCA GGTCGCCAAG CTCGCGGGCC TGCCGCCTTC GGTCGTGGCC CGTGCGCGCG AAGTGCTGAA GACGCTCGAA TCCGGTGAAC GCAGCGGCGG AAACCCGGCA AAGGCGCTGT TGGAGGATCT GCCGCTATTC GCCAACGCTG CCCCTCCGCC ACCGCCAGCG GCCCCGACAT CGGCATTGGA GGCGCGTCTT GCCGACATAT CCCCGGATGC GCTGAGCCCG CGCGAGGCAT TGGACTTGGT CTATGAGTTG AAAAGCCTCG CGGATCGCGA CTGA
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Protein sequence | MSSKTVTPMM AQYLEIKQDH ADALLFYRMG DFYEMFFDDA VEAAAALDIA LTKRGKHDDA DIPMCGVPVH AAEGYLLTLI RKGFRVAVCE QMEDPAEAKK RGSKSVVRRE VVRLVTPGTL TEASLLEARR HNYLAAFAKV RDDSALAWVD ISTGEFRVMA CPAARLSVDL ARLAPREVLL AEGNDLRSLV EEHEAAATEL GRASFDSTAA VDRLCRLYGV ADLEAFGSFE RADLSAMGAI VGYLELTQKG KLPLLRKPVK ERAQHGLQID AATRRNLELT QSLSGGREGA LLTVIDRTVT AQGARLLARR LASPSADLSI IRTRHEGVRY ALEAPEILDT VRTALRQVPD MDRALSRLAL DRGGPRDLAA IRNGLAQAAT LAEALPDDAL PPLWAQSKSR FFGHDALRDL LEKALIAEPP LLTRDGGFVA SGYNVDLDEA RQLRDEGRGV IAGMQAEYAE ATGIASLKVK HNNVLGYFIE TTATHADKML SPPLSDRFIH RQTTANAVRF TTVELSEMET RILNAGGRAL ALEKSIFEEL RQAVIVAAAE LSDCARALAE LDVVTALAVL ARDEDWCAPK VDDSRAFEIS GGRHPVVEAA LRASGTPFIR NDCDLSEGAA PIWLLTGPNM AGKSTFLRQN ALIAILAQMG SYVPATAARI GLVAQVFSRV GASDDLARGR STFMVEMVET AAILNQAGDR ALVILDEIGR GTATYDGLSI AWATLEHLHG VNRCRALFAT HYHEMTGLAA QLSGVENATV AVKEHDGDVI FLHEVRRGAA DRSYGVQVAK LAGLPPSVVA RAREVLKTLE SGERSGGNPA KALLEDLPLF ANAAPPPPPA APTSALEARL ADISPDALSP REALDLVYEL KSLADRD
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