Gene Dshi_3466 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3466 
SymbolmutS 
ID5712524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3646135 
End bp3648768 
Gene Length2634 bp 
Protein Length877 aa 
Translation table11 
GC content65% 
IMG OID641269395 
ProductDNA mismatch repair protein MutS 
Protein accessionYP_001534800 
Protein GI159046006 
COG category[L] Replication, recombination and repair 
COG ID[COG0249] Mismatch repair ATPase (MutS family) 
TIGRFAM ID[TIGR01070] DNA mismatch repair protein MutS 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCAGCA AGACCGTGAC GCCGATGATG GCGCAGTACC TGGAGATCAA GCAGGATCAT 
GCGGATGCCC TGCTTTTCTA CCGGATGGGC GACTTCTACG AGATGTTCTT CGACGACGCG
GTGGAGGCCG CGGCGGCACT GGACATCGCG CTTACCAAGC GTGGCAAGCA TGACGATGCG
GACATTCCCA TGTGCGGCGT GCCCGTGCAT GCGGCGGAGG GTTATTTGCT CACACTGATC
CGCAAGGGGT TTCGCGTCGC CGTCTGCGAA CAGATGGAGG ATCCGGCCGA AGCGAAAAAG
CGCGGCTCCA AGTCCGTCGT GCGGCGGGAG GTCGTTCGGC TTGTGACCCC GGGCACCCTG
ACCGAGGCGA GCCTGCTGGA GGCGCGGCGG CACAATTATC TGGCTGCCTT TGCCAAGGTG
AGAGACGACT CCGCGCTGGC TTGGGTCGAT ATCTCCACTG GCGAGTTCCG GGTCATGGCC
TGCCCCGCGG CCCGGCTGTC GGTGGACCTT GCGCGCCTCG CGCCGCGCGA GGTCTTGCTG
GCCGAGGGCA ACGACCTGCG GTCGCTCGTC GAAGAACACG AGGCGGCGGC GACGGAGCTT
GGGCGCGCCA GTTTCGACAG TACGGCCGCG GTGGACCGGC TGTGCCGGCT TTACGGCGTT
GCCGACCTCG AGGCTTTTGG GAGTTTCGAA CGCGCGGACC TATCCGCGAT GGGTGCAATC
GTCGGCTATC TGGAGTTGAC CCAAAAGGGC AAGCTGCCGC TACTGCGCAA ACCGGTGAAG
GAACGGGCGC AGCATGGTTT GCAGATCGAC GCGGCGACTC GGCGAAATCT GGAGTTGACG
CAATCACTGT CTGGGGGGCG GGAAGGTGCG CTGTTGACTG TGATCGACCG CACCGTCACG
GCACAAGGCG CAAGGCTCCT GGCGCGGCGA CTGGCGAGCC CCTCTGCCGA TCTGTCGATC
ATCCGGACAC GGCACGAGGG TGTCCGCTAT GCGCTCGAGG CGCCCGAGAT CCTCGACACC
GTGCGCACCG CACTGCGGCA GGTGCCGGAT ATGGATCGGG CACTGTCCCG GTTGGCGCTC
GACCGCGGCG GGCCACGGGA TCTGGCGGCG ATCCGAAACG GTCTCGCCCA GGCCGCAACG
CTCGCCGAGG CTCTGCCGGA CGACGCCTTG CCCCCCCTCT GGGCCCAATC GAAGAGCCGG
TTTTTCGGAC ATGACGCCCT GCGCGACCTG TTGGAGAAAG CCCTGATTGC CGAACCCCCG
CTGCTAACGC GAGATGGTGG GTTCGTTGCC TCTGGCTACA ATGTCGACCT GGATGAAGCC
CGGCAGCTGC GCGACGAGGG GCGCGGCGTG ATTGCCGGAA TGCAGGCGGA ATATGCCGAG
GCAACCGGGA TCGCCTCCCT CAAGGTGAAG CACAACAACG TGCTGGGCTA TTTCATTGAA
ACGACCGCCA CCCACGCGGA CAAGATGCTG TCCCCGCCCC TGTCGGACCG GTTCATCCAC
CGCCAGACCA CCGCCAACGC CGTGCGCTTC ACCACCGTGG AGTTGTCCGA GATGGAGACC
CGCATTCTCA ATGCCGGTGG CCGGGCGCTG GCGCTGGAAA AGTCGATCTT CGAAGAGTTG
CGTCAGGCCG TGATCGTTGC GGCCGCCGAG CTGTCGGATT GCGCGCGGGC ATTGGCGGAA
CTGGATGTGG TGACGGCCCT TGCGGTGCTG GCCCGCGACG AGGACTGGTG CGCGCCCAAG
GTCGATGACA GCCGTGCCTT CGAAATCAGC GGCGGACGGC ACCCGGTAGT CGAGGCCGCG
CTGCGCGCCA GTGGTACACC CTTCATCCGC AACGATTGCG ACTTGAGCGA AGGTGCTGCG
CCGATCTGGT TGCTCACCGG GCCGAACATG GCGGGCAAAT CGACCTTCCT GCGCCAGAAC
GCCCTGATCG CGATCCTAGC GCAGATGGGC AGCTACGTGC CCGCAACCGC GGCACGGATC
GGGTTGGTCG CACAGGTTTT CTCCCGTGTT GGTGCGTCGG ATGATTTGGC GCGGGGGCGC
TCGACCTTCA TGGTGGAAAT GGTGGAAACC GCCGCGATTC TGAACCAGGC CGGGGACCGA
GCATTGGTCA TCCTTGACGA GATCGGGCGC GGAACGGCCA CCTATGACGG GCTGTCGATT
GCCTGGGCGA CGCTCGAACA CCTGCACGGG GTGAACCGGT GTCGCGCCCT GTTCGCCACC
CATTACCACG AAATGACCGG CCTTGCTGCG CAACTGTCCG GCGTGGAAAA CGCCACCGTG
GCGGTCAAGG AGCATGATGG CGACGTGATC TTTCTGCACG AGGTGCGGCG CGGTGCGGCG
GATCGATCCT ACGGTGTGCA GGTCGCCAAG CTCGCGGGCC TGCCGCCTTC GGTCGTGGCC
CGTGCGCGCG AAGTGCTGAA GACGCTCGAA TCCGGTGAAC GCAGCGGCGG AAACCCGGCA
AAGGCGCTGT TGGAGGATCT GCCGCTATTC GCCAACGCTG CCCCTCCGCC ACCGCCAGCG
GCCCCGACAT CGGCATTGGA GGCGCGTCTT GCCGACATAT CCCCGGATGC GCTGAGCCCG
CGCGAGGCAT TGGACTTGGT CTATGAGTTG AAAAGCCTCG CGGATCGCGA CTGA
 
Protein sequence
MSSKTVTPMM AQYLEIKQDH ADALLFYRMG DFYEMFFDDA VEAAAALDIA LTKRGKHDDA 
DIPMCGVPVH AAEGYLLTLI RKGFRVAVCE QMEDPAEAKK RGSKSVVRRE VVRLVTPGTL
TEASLLEARR HNYLAAFAKV RDDSALAWVD ISTGEFRVMA CPAARLSVDL ARLAPREVLL
AEGNDLRSLV EEHEAAATEL GRASFDSTAA VDRLCRLYGV ADLEAFGSFE RADLSAMGAI
VGYLELTQKG KLPLLRKPVK ERAQHGLQID AATRRNLELT QSLSGGREGA LLTVIDRTVT
AQGARLLARR LASPSADLSI IRTRHEGVRY ALEAPEILDT VRTALRQVPD MDRALSRLAL
DRGGPRDLAA IRNGLAQAAT LAEALPDDAL PPLWAQSKSR FFGHDALRDL LEKALIAEPP
LLTRDGGFVA SGYNVDLDEA RQLRDEGRGV IAGMQAEYAE ATGIASLKVK HNNVLGYFIE
TTATHADKML SPPLSDRFIH RQTTANAVRF TTVELSEMET RILNAGGRAL ALEKSIFEEL
RQAVIVAAAE LSDCARALAE LDVVTALAVL ARDEDWCAPK VDDSRAFEIS GGRHPVVEAA
LRASGTPFIR NDCDLSEGAA PIWLLTGPNM AGKSTFLRQN ALIAILAQMG SYVPATAARI
GLVAQVFSRV GASDDLARGR STFMVEMVET AAILNQAGDR ALVILDEIGR GTATYDGLSI
AWATLEHLHG VNRCRALFAT HYHEMTGLAA QLSGVENATV AVKEHDGDVI FLHEVRRGAA
DRSYGVQVAK LAGLPPSVVA RAREVLKTLE SGERSGGNPA KALLEDLPLF ANAAPPPPPA
APTSALEARL ADISPDALSP REALDLVYEL KSLADRD