Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3463 |
Symbol | rph |
ID | 5712521 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 3643582 |
End bp | 3644295 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641269392 |
Product | ribonuclease PH |
Protein accession | YP_001534797 |
Protein GI | 159046003 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0689] RNase PH |
TIGRFAM ID | [TIGR01966] ribonuclease PH |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACCGT CAGGACGTCA AACCCATGAG ATGCGCGGCG TCTCGATCGA AACTGGCTTC ACCAGGCACG CCGAAGGATC CTGCCTGATC TCAATGGGTG AAACACGCGT GTTGTGCACC GCCTCCGTTG AGGAGCGCGT GCCGCCGTTT CTGCGTAACA CCGGTCTTGG CTGGGTGACG GCGGAATATG GAATGTTGCC CCGCGCAACC CATACCCGCG GGCGCCGGGA AGCTGCCGCT GGGAAGCAAT CGGGGCGCAC CCAGGAGATC CAGCGCCTAA TCGGACGGAG CCTCCGCGCG GGGGTCGACC GCGTGGCGCT GGGAGAGCGG CAGATCACCA TCGATTGCGA TGTGATCCAG GCCGATGGCG GCACACGCTG CGCGTCGATC ACCGGGGCCT GGGTCGCGCT GAGGCTTGCC GTCAACAAGC TGATGAAGGC GGGCGATATC ATTACGGACC CGCTGACAGA TCACGTAGCC GCGGTGTCCT GTGGTCTCTA CGCCGGGCAA CCCGTACTGG ATCTGGATTA TGCGGAGGAT TCCGAGGCCG GGACCGACGC GAATTTCGTG ATGACCGGCT CCGGCGGTCT GATCGAGGTG CAAGGTTCGG CCGAGGGTGC GCCGTTCTCG CGCAATGCCC TCAACACGCT GATGGACCTT GCCGAGGTCG GTGTTGCCGA GCTGGTCGCC GCACAGAAGG CCGCCACCAG CTGA
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Protein sequence | MRPSGRQTHE MRGVSIETGF TRHAEGSCLI SMGETRVLCT ASVEERVPPF LRNTGLGWVT AEYGMLPRAT HTRGRREAAA GKQSGRTQEI QRLIGRSLRA GVDRVALGER QITIDCDVIQ ADGGTRCASI TGAWVALRLA VNKLMKAGDI ITDPLTDHVA AVSCGLYAGQ PVLDLDYAED SEAGTDANFV MTGSGGLIEV QGSAEGAPFS RNALNTLMDL AEVGVAELVA AQKAATS
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