| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3454 |
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| Symbol | trmE |
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| ID | 5712512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3635603 |
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| End bp | 3636892 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641269383 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001534788 |
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| Protein GI | 159045994 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACACCA TATTTGCGCT TGCTTCCGCA CCGGGGAAAT CCGGTGTTGC CGTGCTGCGT
ATTAGCGGAT CGAGGGCATT TCATGCGGGT AGGGTGCTGG CCGGTGGGCT ACCTGATGCC
CAGCGGACCA GCTTGCGAAA ACTGCGTGAC TCCGATGGAA GTGTGATCGA TGAGGCGCTC
GTCCTCGCGT TTGAAAGCCC CAACAGTTTC ACGGGTGAAG ATTGTGTTGA GTTTCAGACC
CATGGCTCGC CGGCGATCAT TGCAGCATTG ATGAATGAAT TGTCGGCGCT GCCTGGCCTC
CGCTTGGCGC AACCGGGGGA GTTCACGCGT CGTGCCCTCG AAAACAATCG GATGGATCTG
GCCCAGGTTG AAGGTTTGGC CGATTTGATC GAGGCAGAGA CCGAGGCGCA GCGCAAACAG
GCATTGCGAA CTTTTTCCGG CGAACTCGGC CAGAAAGTAG AACTCTGGCG CAAGGATCTG
GTGCGTGCGA TGGCGTTGCT CGAGGTGACC ATTGATTTTG CTGACGAAGA AGTGCCGGAA
GATGTGTATC CCGAGGTTCA GGAATTGCTT GGGCGCGTGT CTCAAAACCT GGCCGCAGAG
AGTGCCGGTA CCCATGCTGC GGAACGCATA AGACATGGGT TCGAGGTTGC AATCCTGGGT
GCGCCGAACG TTGGAAAATC AAGCCTTCTC AATAGATTAG CTGGTCGCGA AGCAGCAATT
ACATCGAGTA TCGCAGGCAC AACGCGTGAT GTGGTCGAGG TGCGCTTGGA CCTTGATGGG
CTGCCGGTCA CGGTGCTGGA TACAGCCGGT TTGCGGGAAA CCCAGGATGA GATTGAACAG
ATTGGTATTA GCCGTGCTAT GGCGCGAGCC GAGTCTGCCG ATCTGCGTAT CATCCTCATT
GAAGATGGCC GTTTGCCCTC GGGTCTTGGG GTGGCTGACG ATGATATCCT GGTGCAGGCA
AAGTCGGATA TTCTTCCGAG TAGTAGCGAG TTTGCAATTT CATCCGTCAC GGGGCGGGGG
ATAGACAGAT TGGTGAAAGC AGTTTCACAT AGGCTGTCAC TTCGTGCTGC TAGTGCAGGC
ACGGCCACCC ATGTTCGACA CCGTCTAGCG ATTTCATCCG CCGTTGAGTC GCTCGATCTC
GCCAAAACAA AGATTTCCGA AGGCTTCCCG GTCGAATTGG TGATAGAAGA CCTTCGGCAA
GCCTTGGTCG ATCTCGAATC GTTGATTGGT CGCGTAGGCG TTGAGCAAGT CCTGGATGAA
ATCTTTGCGA ACTTTTGCCT CGGCAAGTGA
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| Protein sequence | MDTIFALASA PGKSGVAVLR ISGSRAFHAG RVLAGGLPDA QRTSLRKLRD SDGSVIDEAL
VLAFESPNSF TGEDCVEFQT HGSPAIIAAL MNELSALPGL RLAQPGEFTR RALENNRMDL
AQVEGLADLI EAETEAQRKQ ALRTFSGELG QKVELWRKDL VRAMALLEVT IDFADEEVPE
DVYPEVQELL GRVSQNLAAE SAGTHAAERI RHGFEVAILG APNVGKSSLL NRLAGREAAI
TSSIAGTTRD VVEVRLDLDG LPVTVLDTAG LRETQDEIEQ IGISRAMARA ESADLRIILI
EDGRLPSGLG VADDDILVQA KSDILPSSSE FAISSVTGRG IDRLVKAVSH RLSLRAASAG
TATHVRHRLA ISSAVESLDL AKTKISEGFP VELVIEDLRQ ALVDLESLIG RVGVEQVLDE
IFANFCLGK
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