| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3438 |
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| Symbol | addA |
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| ID | 5712496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3620154 |
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| End bp | 3623531 |
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| Gene Length | 3378 bp |
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| Protein Length | 1125 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641269367 |
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| Product | double-strand break repair helicase AddA |
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| Protein accession | YP_001534772 |
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| Protein GI | 159045978 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCCC CGGCCCCGAA CGACGCGACG CGCGCGCAGA TCGCCGCTGC GGACCCGACT
TCGTCGGTTT GGCTGTCGGC CAATGCGGGC TCGGGCAAGA CCAAGGTTCT CACCGACCGG
GTGGCGCGAC TGCTGCTCGA AGACGTACCT CCGGAACGCA TTCTCTGCCT GACCTATACG
AAAGCCGCCG CGAGCGAGAT GCAGAACCGG CTCTTCCGCA CGCTCGGAGG TTGGTCGATG
CTGGATGATG GCGACCTGCG GCGGCGACTG GCCGAGCTGG GCCTGCTGCA GGTCGAGATC
ACGGCAGCGC GTTGCCGCAG CGCCCGCACG CTCTTTGCCC GAGCGATCGA GACCCCGGGC
GGACTGAAGA TCCAGACGAT CCACTCCTTC TGCGCCAGCC TTTTGCGCCG TTTTCCGATG
GAAGCTGGCG TGTCGCCGCA ATTCACCGAA ATGGACAGTC GCGCCGAGGC CGAGTTGCAA
CGGGCTGTGC TGCGCCAGAT GGCCGAGGGA CCGGGTCGCG ACAGCCTCTT TGCCCTCGCG
CAGAGCGTGG ACGAGACGAA CTTGCCGGAG CTCATGAAAG AACTTCTGAG CCACCGCGAG
GCGCTCACAA GCCCGCCCGC CCAAGGCGTT ATCGAAAAGA CCCTTGGATT GGCTCCAGGG
GATAGCATCA CAGCGCTCTC GGACCGCACC TTTCAAGCCA AGGATCGCGA CTTGATCGGG
CGTGTCGCGA AAGCCTGCGC CACCGGCAGT TCAACCGATG CCAAAGCCGC GGCAAAGCTG
CAAGAACTTG CAGACCGTGC GCCGGATACA ACGTGGTTCG AGGTTCTGGA GGGCTTGCTA
CTCTATGGTG CGACGGCCAA GGCCGGCCCT TTCGCGCCCA AGACCGACGC CTTCCCAACG
AAAGCCACGC GGACCGCGCT TGGCGCCGAC ATGGGCGCGC TGAACGACCT GATGTGTCGT
GTCGCCGAAG CGCGACAGCC TCGTCTGGCG TTGGAAATCG CGGCGCAGAC CCGGATCGTC
CACAACTTCG CCAACGTGTT CCTGAAGGCC TACCAGGCGG GCAAGGACGC GCGTGGTTGG
TTGGATTTCG ACGATCTGAT CCTGCGCGCC AAGACGCTTC TGACCGATCC GGGGGTGGCG
CAATGGGTTC TCTTCCGACT TGATGGCGGG ATCGACCATA TGCTGGTGGA CGAAGCGCAG
GACACCTCGC CCGTGCAATG GGATGTCATT CGCCTGCTGA CGCGCGAATT CACCGCCGGT
CAGGGCGCGC GCACCAATGT CTTGCGCACC ATTTTCGTGG TCGGAGACCA GAAACAATCG
ATCTATTCAT TCCAAGGCGC CGATCCCGCC GGGTTTGACC GGATGCGCCA GCATTTCGGC
ACCGAGCTGG CCCAGGTCGG CACGCCGTTG CAGGAACGGC TGCTCCTGTT TTCGTTCCGA
TCGTCGAGGG CCGTACTGCG TCATGTGGAC GAGACCTTCT CTCGGTTCCA GCACCAGGGC
CTCGGCGGCG GGTCGGAACA CATCGCGTTT CACGAAGCCC TGCCGGGGCG GGTCGACCTG
TGGCCTGCGT TGGCGAAGGC CGAAAAACAG ACGCCCCAAA ACTGGACCGA CCCGGTGGAC
AAGATCGCCG CGGACGATCC GCGTCACGTA CTGGCCCGCA AGATTGCGGC AGAGATCAGA
CGCCTGCTTG AGAGCGGCAC GCAGATCACC TCCGCCAAGG GCGAGACTCG CCCGATCACG
CCCGGCGATT TTCTGGTTCT GGTGCAAAAA CGGTCCGAGA TCTTCCACGA GTTGATCCGC
GCCTGCAAGA CCGAACGCTT GCCAATCGCG GGTTCGGACC GGCTGCGTGT GGGGGCGGAA
CTGGCGGTGC AGGATTTGAT GGCACTGCTG GCCTTTGCCG CGACGCCGGA GGATAGCATG
GCGTTGGCCT GCGTGCTGCG TTCCCCACTC TGCGGCTGGA CCCAGCGCGA GCTGCACGTC
CTCGCACAGC CGAACCGAAA CCGCTTCCTC TGGGCGGCTT TGCGCGACAG CGACGCGCAC
GGTGAAACCC GCGCTTTCCT GCAGGATGTC AGGGATCAGG CTGATTTCCT GCGCCCATAC
GACCTGCTTG AACGGGTGCT AACCCGCCAT GGCGGGCGCG AACGGCTAAT TGCGCGGCTG
GGCGAGGAAG CCGAGGAAGG CATCGACGTC CTGCTCGACC AAGCCCTGCA ATACGAGCAG
ACCGAAATAC CCAGCCTGAG CGGCTTCGTG GCATGGTTCC GGCAGGACGA CATGAGCATT
AAACGTCAGA TAGACGCCCG TCGGGACGAG ATCCGGGTGA TGACAGTCCA CGGTGCCAAG
GGACTGGAAG CCCCTATCGT CATCATGCCC GATTGTGCAA AACCGTCCAA TACCAACACT
CGCAGCAAGC TGCTCCCGCT TGAAGATGGC CCCTTGGTGT GGGCCGGAAA CAAGGAAACG
CGCCCCGAAG TTATAAAGCC TCGCGCCGAG GAGATTGCAC TGCGCGACAC CGAAGAGCGG
ATGCGCCTGC TTTATGTCGC CATGACCCGC GCCGAGAGCT GGCTGATCGT GGCCGCCGCG
GGGGAGACCG GGACCGGCAC GGACAGCTGG CACGCCATGG TGACCGAGGG TATCGAGGCA
CAGACGCCCC ACGAGGTGGA GTTTCCGACC GGGACCGGCT TGCGGCTTGA GCACGGGGTC
TGGCCCCCCG ATGCCCCTTC CCCCATGCCC CTCCATACGG CCCATAGTCC ACAACAGCCC
GCCTTCGCAC CAATGCCTCC GATGCCTGAA CGGCGCAACA CCCGTGCACC CTCCGATCTC
GGTGGGGCGA AAGTGATCGA GAACGCAATC GAGGGCCTCG ACAAGGATGC GGCCCAACGA
CGTGGCAAGC AGATTCACCT GCTTCTGGAG CATCTGCCGG ATCATCCACC GGAAAGTTGG
GCAAGCCTCG CGCCGCGCCT TCTGGGAGCG GAGGACAACC CCGAGACTGT CGCAGACCTT
CTGGCGGAAG CGCGCGGCGT CCTCGAAAAC CCCGCTTTAG AGCCGCTTTT CGCTCCGGAC
ACGCTTGCCG AGGTCAGCCT GACCGCGCCC CTACCCGGCC TGAATGGCGC ACAGATCCTT
GGGACAGTCG ATCGTCTCAT CATTGGACCG GAGCGTATCG TCGCCGTCGA CTTCAAAAGC
AACCAGGCCG TCCCTGCGCA CCCAGAAGAC ACCCCCGAAG GCCTGCTGCG CCAGATGGGC
GCTTATGCCG AAGCTCTCGC CGCGATCTAT CCGGATATGT CCATCGAGAC AGCGATCCTC
TGGACCCGAA CCGCGACTCT CATGCCCTTG CCCCACGGTT TGGTGATTGC GGCGTTACAA
AGGACGCCGC CAGCTTGA
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| Protein sequence | MTAPAPNDAT RAQIAAADPT SSVWLSANAG SGKTKVLTDR VARLLLEDVP PERILCLTYT
KAAASEMQNR LFRTLGGWSM LDDGDLRRRL AELGLLQVEI TAARCRSART LFARAIETPG
GLKIQTIHSF CASLLRRFPM EAGVSPQFTE MDSRAEAELQ RAVLRQMAEG PGRDSLFALA
QSVDETNLPE LMKELLSHRE ALTSPPAQGV IEKTLGLAPG DSITALSDRT FQAKDRDLIG
RVAKACATGS STDAKAAAKL QELADRAPDT TWFEVLEGLL LYGATAKAGP FAPKTDAFPT
KATRTALGAD MGALNDLMCR VAEARQPRLA LEIAAQTRIV HNFANVFLKA YQAGKDARGW
LDFDDLILRA KTLLTDPGVA QWVLFRLDGG IDHMLVDEAQ DTSPVQWDVI RLLTREFTAG
QGARTNVLRT IFVVGDQKQS IYSFQGADPA GFDRMRQHFG TELAQVGTPL QERLLLFSFR
SSRAVLRHVD ETFSRFQHQG LGGGSEHIAF HEALPGRVDL WPALAKAEKQ TPQNWTDPVD
KIAADDPRHV LARKIAAEIR RLLESGTQIT SAKGETRPIT PGDFLVLVQK RSEIFHELIR
ACKTERLPIA GSDRLRVGAE LAVQDLMALL AFAATPEDSM ALACVLRSPL CGWTQRELHV
LAQPNRNRFL WAALRDSDAH GETRAFLQDV RDQADFLRPY DLLERVLTRH GGRERLIARL
GEEAEEGIDV LLDQALQYEQ TEIPSLSGFV AWFRQDDMSI KRQIDARRDE IRVMTVHGAK
GLEAPIVIMP DCAKPSNTNT RSKLLPLEDG PLVWAGNKET RPEVIKPRAE EIALRDTEER
MRLLYVAMTR AESWLIVAAA GETGTGTDSW HAMVTEGIEA QTPHEVEFPT GTGLRLEHGV
WPPDAPSPMP LHTAHSPQQP AFAPMPPMPE RRNTRAPSDL GGAKVIENAI EGLDKDAAQR
RGKQIHLLLE HLPDHPPESW ASLAPRLLGA EDNPETVADL LAEARGVLEN PALEPLFAPD
TLAEVSLTAP LPGLNGAQIL GTVDRLIIGP ERIVAVDFKS NQAVPAHPED TPEGLLRQMG
AYAEALAAIY PDMSIETAIL WTRTATLMPL PHGLVIAALQ RTPPA
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