| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3427 |
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| Symbol | rafI |
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| ID | 5712485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3608567 |
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| End bp | 3609595 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641269356 |
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| Product | lipopolysaccharide 1 |
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| Protein accession | YP_001534761 |
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| Protein GI | 159045967 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1442] Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACAGGCT ATGGGGCTGA GAGGTCATTG GCAAAACCGT TACGAGGCAT GAACGCGATA
CCCGGCCCGC GAGTAACCGC ATCAAGCCAA TGCGCCCGGC ATGAACATGC TGTCTGCTTT
TGCAGCGATG AAGGCTATCT GCCTTTCGCG CTCTTCGCTG CGCTCCAGAT TCACCGGCTG
CATCCAGACC GATGCTTCGA TCTGGTGATT GCACACACAG GTCCCTTGTC CGTGCCACAC
GGCTTTCCAG GGATCGGAAT TCGGTATGTT GAGATCGACA CGGGGGGATG CTTCGAGAGA
TTGGCGCTCG ACGCGCGCCG AACCGGCAGC ACATATCTTC GGCTGGCCCT GTCCGGGGCT
TTGGGCCACG ATTACCAGCG CATTCTCTAC ATGGACTCAG ATGTATTTGC CTTGCGCGAT
GGCCTGCATG TCCTTCTCTT TACGGATATG CGGGGCAAGC CCCTTGCTGC AGTGCGTGAC
AACTCTCAAT GGCGCACATC TGGACGCAAG CCCGACGATC TCGTCACCCT GAATTTACCT
GCGAGGCCGT ATTTTAATGC CGGTGTTCTG CTGATGGATA CTGCCCGCTT GAACGAACAG
GACATACTTG CGAAGGCGCT GGATCTGGGC ACTAGCCAAG CGGGGCGGCT GGCACGCCAT
GACCAAACCC TTCTGAACGC GGTGACGAGC GGCAATTGGG CCGAAATGTC CCCGCGCTGG
AACTGGCAAT TCACTTGGGC TTCATGGATT TTCGCACTGT CCGAAGACGC GCGCATCCTG
CACTTCATTG GTCCGAACAA GCCTTGGGCA GACACTTCCG GACGGTTTCC GAAGTCCATC
ACCCGGGCCT ACGGGGATTT TCTCGCAGAA CAGTTTCCGG AAAGGACCGT TGAACGAGCT
GCAAACTCGC CCATCAATGA TCCGCGCAGG CTTATCAAAT CGCTGATCAA GCATGGCTTG
TCCCGCAAGA AGATGAGCGC ATATCTCGCA CGCTTCGCAG ATGACTTTAC CCTGATCGAC
CCAAGCTGA
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| Protein sequence | MTGYGAERSL AKPLRGMNAI PGPRVTASSQ CARHEHAVCF CSDEGYLPFA LFAALQIHRL
HPDRCFDLVI AHTGPLSVPH GFPGIGIRYV EIDTGGCFER LALDARRTGS TYLRLALSGA
LGHDYQRILY MDSDVFALRD GLHVLLFTDM RGKPLAAVRD NSQWRTSGRK PDDLVTLNLP
ARPYFNAGVL LMDTARLNEQ DILAKALDLG TSQAGRLARH DQTLLNAVTS GNWAEMSPRW
NWQFTWASWI FALSEDARIL HFIGPNKPWA DTSGRFPKSI TRAYGDFLAE QFPERTVERA
ANSPINDPRR LIKSLIKHGL SRKKMSAYLA RFADDFTLID PS
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