| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3396 |
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| Symbol | dctQ2 |
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| ID | 5712454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3574537 |
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| End bp | 3575340 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641269325 |
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| Product | TRAP transporter - DctQ subunit |
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| Protein accession | YP_001534730 |
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| Protein GI | 159045936 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACCCG TCGAAGAAAT CATCAAGCTC TCTGATCCGG GGGAGGTCGG TCGCGAAGAA
CATAATCGCG GCGACCGGGT CATCGTGCAA ATCTCGAATG TGATGGCGTG GCTGTTCCCG
ATCCTGATGG TCGCCATTGT TGCACAGGTC TTCCTGCGTG GTTCGGGTAT GAACCAGGCA
TGGCTCGACG ATCTGCAATG GTGGCTTTAC GGCTCTGCGG TCCTGGTCGG GATCGGATAT
GCGGTGACGA ACAACGCCCA TGTTCGGGTC GACATCCTCT TCGACAATTT CGGCTCGGAC
AAGAAGAACC GGATCGAAAT CTTCGGCCTG GTTTGGTTGT TCCTGCCGTT CATCATCCTG
TGCTGGGATG TCACTCTGCC CTACGCCATC GCGTCGGTCA GCGCGAATGA AGGATCCGAC
AGTCCCAACG GGCTCCATAA CCTTTGGATG CTCAAGGTGT TCATGAACGT CTCGTTCGCG
TTCATCGGTA TTGCGATCTG GTCGGCTTAT GTGCGCTTTC TCAACAAGAT GACGGAACCC
GTGCTGTGGA AGCAGCTCCT ATTCGCGTTT CCATCCACGA TGTTCCTGAT CAACCTGGTG
GTCTACTATT CGATCTGGTG GGCCCTGCGG CTGACGACGC CTGCGGATGT GACCAATCGC
GAGATCGGCC GTCACCCGAT TTTCGATGAA TTGCAGGTCG GGGTCGAAGA GATCCCCTAC
ACGATCATCA TCACCGTCAT TGTGACGTTC ATCGTGATCG GTCTCGCCTA TGCGCGCGAT
CGTGCTCGCG AAGCGAGGTA CTAA
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| Protein sequence | MEPVEEIIKL SDPGEVGREE HNRGDRVIVQ ISNVMAWLFP ILMVAIVAQV FLRGSGMNQA
WLDDLQWWLY GSAVLVGIGY AVTNNAHVRV DILFDNFGSD KKNRIEIFGL VWLFLPFIIL
CWDVTLPYAI ASVSANEGSD SPNGLHNLWM LKVFMNVSFA FIGIAIWSAY VRFLNKMTEP
VLWKQLLFAF PSTMFLINLV VYYSIWWALR LTTPADVTNR EIGRHPIFDE LQVGVEEIPY
TIIITVIVTF IVIGLAYARD RAREARY
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