| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3229 |
|---|
| Symbol | |
|---|
| ID | 5712286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3397932 |
|---|
| End bp | 3399182 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641269157 |
|---|
| Product | MiaB-like tRNA modifying enzyme |
|---|
| Protein accession | YP_001534563 |
|---|
| Protein GI | 159045769 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01579] MiaB-like tRNA modifying enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0152656 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCC CGCGTTTCAC CACTTTGGGC TGCCGCCTCA ATGCCTACGA GTCCGAAGCC
ATGCGCGAGA TGGCCGAGGC CGCGGGCCTG TCGGACGCGC TGGTGGTCAA CACCTGTGCG
GTGACCGCCG AAGCCGTGCG CAAATCCCGG CAGGAGATCC GCCGCCTGCG CCGCGACAAC
CCCGACGCCC CGATCATTGT CACCGGCTGC GCCGCCCAGA CCGAGCCCGA AACCTTCGCC
GCCATGCCCG AGGTCACCCG CGTCCTCGGC AATACCGAGA AGATGCAGCC CGAGACCTGG
GCGGCGCTGG TCCCCGACCT CATTGGCCGG ACCGAGCGCG TGCAGGTCGA CGACATCATG
TCGGTGCGCG AGACCGCCGG GCATCTGATC GACGGGTTCG GCCGCCACCG CGCCTATGTG
CAGGTCCAGA ACGGCTGCGA TCACCGCTGC ACCTTCTGCA TCATCCCCTA CGGGCGCGGC
AATTCCCGCT CCGTGCCAGC CGGCGTGGTG GTGGACCAGA TCAAGCGGCT GGTGGACCGG
GGCTTCAACG AGGTGGTGCT GACCGGCGTG GACCTGACAA GCTGGGGCGC GGACCTGCCC
GGCACCCCGC GGCTGGGCGA TCTGGTGATG CGCATCCTGC GCCTGGTGCC GGACCTGCCG
CGCCTCAGGA TCAGCTCCAT CGACAGTATC GAGGCGGACG AGAACCTGAT GCGCGCCATC
GCGACCGAAC CGCGCCTGAT GCCCCATCTG CACCTGAGCC TGCAGGCCGG GGACGACCTG
ATCCTCAAAC GGATGAAACG CCGCCACCTG CGCGACGACG CCATCGCCTT CTGCGAAGAG
GCCCGCCGCC TGCGCCCCGA GATGACCTTC GGCGCCGACA TCATCGCGGG CTTTCCGACC
GAGACCGAGG CGATGTTCGA AAACTCGCTT CGGCTGGTCA CCGACTGCGA CCTGACCTGG
CTGCACGTCT TTCCCTATTC ACCGCGCAAG GGCACCCCCG CCGCCCGGAT GCCCGCCGTC
CCGGGTGCTG CGATCAAGGA CCGCGCCGCC CGCCTGCGGG CCCTGGGCGC CACCCAGGTC
GCGCGCCACC TGGCCGCACA ACAGGGCCGA ACCCACAAGA TCCTGATCGA ATCTCCCCGC
CTGGGCCGGA CAGAGCAGTT CACCGAGGTC GCCTTCGCCG AGGACCACCC CGAGGGCCAG
ATCGTCGAAG CCCGGATCAC CGGCATCGCA GGACAGCGGC TGGCGGCCTG A
|
|---|
| Protein sequence | MTAPRFTTLG CRLNAYESEA MREMAEAAGL SDALVVNTCA VTAEAVRKSR QEIRRLRRDN
PDAPIIVTGC AAQTEPETFA AMPEVTRVLG NTEKMQPETW AALVPDLIGR TERVQVDDIM
SVRETAGHLI DGFGRHRAYV QVQNGCDHRC TFCIIPYGRG NSRSVPAGVV VDQIKRLVDR
GFNEVVLTGV DLTSWGADLP GTPRLGDLVM RILRLVPDLP RLRISSIDSI EADENLMRAI
ATEPRLMPHL HLSLQAGDDL ILKRMKRRHL RDDAIAFCEE ARRLRPEMTF GADIIAGFPT
ETEAMFENSL RLVTDCDLTW LHVFPYSPRK GTPAARMPAV PGAAIKDRAA RLRALGATQV
ARHLAAQQGR THKILIESPR LGRTEQFTEV AFAEDHPEGQ IVEARITGIA GQRLAA
|
|---|
| |