| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3220 |
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| Symbol | cas1 |
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| ID | 5712276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3388955 |
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| End bp | 3389830 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641269147 |
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| Product | cas1: CRISPR-associated protein Cas1 |
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| Protein accession | YP_001534554 |
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| Protein GI | 159045760 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
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| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03638] CRISPR-associated endonuclease Cas1, ECOLI subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.615148 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAAGG GGCGGCTCGG TCTCGACAGT GCGAAGGTCC CCCACGGGGA CCGCGCAGGG
CTACTCTATC TCGCGCGCGG GGCGCTGACC GCCCGCGATG GCACACTTGC CTTCCAGCGC
GGGTCCGCCG AAGGTCCCGA CGCCCTCGCG CAGGGGGACC ATGCGATCCC GCTCCAGGGC
GTGTCGATGA TCCTGCTTGG ACCCGGCTCC ACCGTCAGCC ACGACGCCCT GCGCCTGCTC
GCCCATGCCC GTACGGCCCT CGCCGCCGTG GGCGAGGACG GCGTGCGCCT CTACACCGCA
CCGCCACTGA TCCCCGACCG CTCCGGCCTC GCCCGGCTTC AGGCCCGGCT CTGGGCCGAT
GACGACATGC GTATCATGAT CGCGCGGCGC ATGTACGCGC TCCGGCTTGG CGAGGTCCTG
CCACACCGCA CGCTGGATGT CCTGCGCGGG ATCGAAGGCG CCCGGGTCAA GGAAAGCTAT
AAGATCACCG CAGAGCGCTT CGGCGTGCCC TGGCGCGGCC GGCGCTACGA CCGGGCCGAC
CCGCTAGCCG CCGACCTGCC CAACCAGGCC CTCAACCACG CCGCCAGCGC CGTCGAGGCC
GCTGCGGCCA TCGCCGTGAG CGCAACCGCG ACCGTGCCAC AACTGGGCTT CATCCACGAG
GATCCCGGCC AGTCCTTCGT CCTCGATATC GCCGACCTCT GGCGCGAAAC TGTGACACTG
CCCTGCGCCT TCCGCGCCGC CAAACGCGCG GCCGAGCGCC CGGACATGCC CGTCGAGCGT
ATCGCGCGCC GCCTGACCGG CGAGACGCTG GCGAAGGAGC AGGTCATCCC CGCGATGATC
GACCGGATCA AGACCCTGAT CGAAGAGGGC CCATGA
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| Protein sequence | MLKGRLGLDS AKVPHGDRAG LLYLARGALT ARDGTLAFQR GSAEGPDALA QGDHAIPLQG
VSMILLGPGS TVSHDALRLL AHARTALAAV GEDGVRLYTA PPLIPDRSGL ARLQARLWAD
DDMRIMIARR MYALRLGEVL PHRTLDVLRG IEGARVKESY KITAERFGVP WRGRRYDRAD
PLAADLPNQA LNHAASAVEA AAAIAVSATA TVPQLGFIHE DPGQSFVLDI ADLWRETVTL
PCAFRAAKRA AERPDMPVER IARRLTGETL AKEQVIPAMI DRIKTLIEEG P
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