| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3214 |
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| Symbol | cas3 |
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| ID | 5712270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3381532 |
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| End bp | 3384105 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641269141 |
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| Product | cas3: CRISPR-associated helicase Cas3 |
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| Protein accession | YP_001534548 |
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| Protein GI | 159045754 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGAAGGG TCAAGTACAA CGTGGACGCG CGCATTACAC ACAACCCGGC CTGGGGAAAG
ACCGACGCGG CCGGACGCCC CTCGCATCAC CTGGCCCACC ATTCGATGGA TGTGGCCGCG
GTGCTGGAGG GGTTGCTTCG CCATCCGGTG ATCTCGGCGC GCGCAGCCGC GGCGGCGGGC
ATTTACCTTA AGCCGGAGGC TGTCGCCTGG TTAAGCGCCT TTGCCTTTCT CCACGACATC
GGCAAGCTGT CCCCGCGCTT TCAGGCCAAG GTCTGGCCCG ATGGCATCGC GGGCGGAACG
GCCAGTCACC TCAGCGAGGG GCTGATCTGG GCGGATCGGC TGCTAGACGG TCAGCCGCTT
CTGGACGGGG CGGCCGGTCC GCTCGTTGCG CCGCTGGTCG CCGGCGGTAT GGAAAAGGCG
TGGTTTGGCG CGTTGCTGGC CCATCACGGT CGCCCGATGG CGTTCGACAG CTTTGTTTAT
CCGCCCAACC CGCGGGACGT CTTTCGAGAC GTGCCGGGCT ACGACTGGCG GGCCGAGGAT
CGCCGGATGG GTGCGGCTCT GCGCCAGTGG TTCCCTGAGA TCGCCATCGA TCTGGCGGTC
CTGAGATCCC ACCGCCTGGT GCACCTCTTC GCGGGTCTGC TGGCGCTCGC GGACTGGATC
GGCTCCGACG ACGGGGCGTT TCCCCAGCGC CGCGACTTTG ACCCTGACTA TGGCGCATCC
GCCCGCGCGC GCGCCGCGGC GGCGCTTGTG GCCATCGGCC TGTCGAACCC TGCTTGGCCG
GGGACCGCGC CCAGTTTCCG GGATTTGACA GGCCACCCGG TGCCGCGCGG CGTGCAACAA
ACGATCGCAG ATATTCCCCT CGAGGCCCGC CTGGTGATCA TCGAGGCAGA AACCGGCTCG
GGCAAGACCG AGGCGGCGCT GGCCCATTTC GCGCGGTTGC GGTCCGAGGG GCGGGTCGAT
GCACTTTATT TCGCGGTTCC GACAAGGGCT GCTGCGGGAC AGTTGCACCG CCGCATACAG
GAGGCGATGG CGCGCATCGG CGGCCCGGAG GCGGTGCTCG CTGTGCCAGG AATGCTTCGC
GCCGGGCTGG CGGAGGGACG CAAGCTGCCC GGCTTTCGCG TGCTGTGGGA CGATGATCGC
GTCCATTGGG CGGCGGAGCA CCCCACGCGG TTTCTCGCTG CCCCTGTGGC GGTCGGAACG
ATCGACCAAG CACTTCTGGC GGGCTTGCAG GTGAAGCACG CACCCTTGCG GGCCGCCGCG
CTGTCGCGGA GCCTTCTGGT GATCGACGAG GTCCATGCTT CGGACGCCTA CATGAACGCG
GTCGCCAGAC CTCTGGTGGC TGGGCATACC GCGCTGGGGG GCCATACGCT CTTGATGTCG
GCGACGCTCG GCGCGGGGCA ACGGGCAGCC TGGCTCGGGC AGCCCGCCCC GTCGCAAAGG
GCTGCGAGCG GGCTTCCATA CCCCGCGATC TGGCACGATG CAGCTCCTGC GGACCCCCTG
CGGCCCGATC CAGTTGGCTA CGCCAAGTCG GTACATCCCC GTCTTGTCGG CACGATGGAC
GCGGAGGCCG CCGCGCACAA AGCCGTTGCG GCGGCTGAGA AGGGCGCCCG GGTTCTGGTA
CTGCGCAACA CGGTGGAGGC GGCTGTGGCG ACTTGGCGGG CGGCGACGCG TGCGCGCGCC
GATTTGTGCC TCTCAGTTTT GGGCCAGCCA GCCCTGCATC ACGCCCGGTT CGCGGCGGAG
GATCGGCGAA AGCTGGATGC AGCGGTCGAG CAGGCTCTTG GGCGTGCGGG AGTGACAACG
GGAATAGTGG TCTTGGGTAC GCAAACCCTG GAACAATCTC TCGACATCGA TGCGGATTTC
CTGATCACGG ACCTCTGCCC CATGGATGTC TTGTTGCAAC GTATTGGTCG CCTGCACCGC
CACGCGGATC GCACCCGGCC CGCAGGTTTC GAAGCAGCCG TCGCGTCCAT TATGGTCCCC
GAGTGCGGGC TGGCCGCCTT GGCCGATGGT CCGCGTTTCG AGAACGGGCT GGGCGCGTGG
CAGACCGCCG GTGGTTACGC AGGGATCTAT CTTGACCTGC GCGGCCTCGA ACTCACCCGA
CGCTGCATTG CCGACCGGCC TGTTTGGCAG ATCCCCGAGG ACAACCGGAC CCTTGTGGAG
GCTGCGACGC ATCCCGATGC CTTGGCTTCT GTCGAAGCCG CGCTGGACTG GGACGAGTAT
GGCCATCGCA TCGATGCAAA GTCCCTCGCA GAAGGGCGCG CGGGCGGGCT TTTGTCCCTT
GATCGGGGCG CGCCGTTCCC CACGGCTTTC CCGGGCGCTG ACGAAGCGGT GCAGACCCGG
CTGGGCGCGC GCGGCCCGAG TTTCGCATTG CCCACTGGCA CCGTCGGCCC CTTCGGCACG
CCAATCTCTG TGATCGCTCC CCCGGCCCAC TGGTGCGTCG GCCTGACCGG AGAAGAGCCC
GTGAACGTGA CACAAGGAGA GACTGGGATT CGTCTGACCA TTGGCGATAA CGAATTTCTC
TATGATCGCT CGGGGCTGTC ACGCGCACGC GCGCCTCGGC GACCACTTGG ATAA
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| Protein sequence | MRRVKYNVDA RITHNPAWGK TDAAGRPSHH LAHHSMDVAA VLEGLLRHPV ISARAAAAAG
IYLKPEAVAW LSAFAFLHDI GKLSPRFQAK VWPDGIAGGT ASHLSEGLIW ADRLLDGQPL
LDGAAGPLVA PLVAGGMEKA WFGALLAHHG RPMAFDSFVY PPNPRDVFRD VPGYDWRAED
RRMGAALRQW FPEIAIDLAV LRSHRLVHLF AGLLALADWI GSDDGAFPQR RDFDPDYGAS
ARARAAAALV AIGLSNPAWP GTAPSFRDLT GHPVPRGVQQ TIADIPLEAR LVIIEAETGS
GKTEAALAHF ARLRSEGRVD ALYFAVPTRA AAGQLHRRIQ EAMARIGGPE AVLAVPGMLR
AGLAEGRKLP GFRVLWDDDR VHWAAEHPTR FLAAPVAVGT IDQALLAGLQ VKHAPLRAAA
LSRSLLVIDE VHASDAYMNA VARPLVAGHT ALGGHTLLMS ATLGAGQRAA WLGQPAPSQR
AASGLPYPAI WHDAAPADPL RPDPVGYAKS VHPRLVGTMD AEAAAHKAVA AAEKGARVLV
LRNTVEAAVA TWRAATRARA DLCLSVLGQP ALHHARFAAE DRRKLDAAVE QALGRAGVTT
GIVVLGTQTL EQSLDIDADF LITDLCPMDV LLQRIGRLHR HADRTRPAGF EAAVASIMVP
ECGLAALADG PRFENGLGAW QTAGGYAGIY LDLRGLELTR RCIADRPVWQ IPEDNRTLVE
AATHPDALAS VEAALDWDEY GHRIDAKSLA EGRAGGLLSL DRGAPFPTAF PGADEAVQTR
LGARGPSFAL PTGTVGPFGT PISVIAPPAH WCVGLTGEEP VNVTQGETGI RLTIGDNEFL
YDRSGLSRAR APRRPLG
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