Gene Dshi_3187 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3187 
SymbolnorE 
ID5712243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3351594 
End bp3352148 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content68% 
IMG OID641269114 
Productnitric oxide reductase E protein 
Protein accessionYP_001534521 
Protein GI159045727 
COG category[C] Energy production and conversion 
COG ID[COG1845] Heme/copper-type cytochrome/quinol oxidase, subunit 3 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGACA CATCGCGGGA CCCTTTCGAC GAGCTGCCGG GTGGCCTGAT GATCTGGGTG 
CTCGTGGTCA GCGAGCTTCT GGTGTTCGGC GCGGGACTTG CGGCCTTTCT CGGGGTCCGG
ATCACGGATC CCGGCGGGTT CGCCACCGCA CAGGAGGCCC TGCACCCCGT CCGGGCGGGC
ATCAATACGG TCGTTCTGGT CACCAGCGGG CTTTTCGCGG CGCTGGCAAC GCAGGCCTGT
ACGGCTGGAC GGACGGCGGC CACGCGCGGC TGGCTTGCGG CGGCCGGGAC GCTCGGGCTG
GTCTTTCTCG TGATAAAGGG CAGCGAGTTC GCGGATCTCG CGGCGCTGGG GCTGTCGACC
GAGACCCACG CCTTCTTCAC TTTCTACTTC CTGCTCACCG GGTTTCACGC CGCCCATGTG
GTCGCGGGTG TTCTCGTCCT GGCCCTGGTG GCCTGGCGCC CGCGTCCGGC CCCGGTCGAG
GCGGCGACGG CGTTCTGGCA CATGGTAGAC CTGGTCTGGG TGCTGCTCTT TCCCGTGATC
TACCTGATGG CATGA
 
Protein sequence
MSDTSRDPFD ELPGGLMIWV LVVSELLVFG AGLAAFLGVR ITDPGGFATA QEALHPVRAG 
INTVVLVTSG LFAALATQAC TAGRTAATRG WLAAAGTLGL VFLVIKGSEF ADLAALGLST
ETHAFFTFYF LLTGFHAAHV VAGVLVLALV AWRPRPAPVE AATAFWHMVD LVWVLLFPVI
YLMA