| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3168 |
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| Symbol | apbE1 |
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| ID | 5712224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3332404 |
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| End bp | 3333345 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641269095 |
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| Product | ApbE family lipoprotein |
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| Protein accession | YP_001534502 |
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| Protein GI | 159045708 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACG GAGTGATCTC AGGGCTGACT CGGCGCCGGT TTCTCGCGCT TTCCGCGGGC
GCCTTGTGCG GCGCGAGCAG CGTTGCCGCG GCAAGCCGAC CCGTGACGCG TTGGCAGGGC
ACGGCCCTTG GCGCCGATGC CTCCGCGCAA CTCGTGGGCC TGGACCCTGC AAGCGCGTCC
GACATCCTGG TCGGGCTGCA GCGGGAGTTG CGGCGGCTTG AAACCCTGTT CAGCCTCTAC
CGGCCCGAAT CCCAGGTTTC GCGGCTGAAC CGGGAGGGTC GACTGGATGC GCCCGCGCCC
GAGCTTCTGG AGGTTCTGGC CCAATGCGAT GCGTTGCACC GGGGAACCGG GGGGGCGTTC
GATCCGACCA CGCAGCCACT TTTCGCGACC TTTGCGCAGG CGGCGGCGGC CGGGCGGACC
CCTTCGGGCG ACGAGGTCGC ACGGGCCCGC GCCGCGGTCG GCTGGCACCA TCTGAGGATC
GGCACCGACA GCGTAGCGTT CGCAAGGCCC GGCGGGCAGC TGACGCTCAA CGGGATCGCG
CAGGGCTATA TCAGCGACCG AATCGCTGCC TGGCTGCGGG ACCGGGGTTT GACCGACATC
CTGCTTGAGG CGGGCGAAAT CGTCGCCCTG GGCCACGGGC CGGACGCAAC GCCCTGGCGC
TGCCGTATCG CGGATGCCGC CGGCACCTCG CGCCGCGAGC TCCGCTTGCG GGATCGGGCG
ATCGCCACAT CCGCCCCGGA TGCCATGACG CTTGCGGGCG CACGCCACAT CTTCGATCCG
GCCAGCGGAC GCAGTGCCGA CAGGGGGCGT ATGACTTCCG TGTCGGCCCC GGCCGCGATG
CTGGCAGACG GGCTGTCCAC GGCCCTGTGC GTTCTGCCGC CGGAGAGCCA TGCCACCGTC
ATCGCCCGGT TTCCCGGTGC GCGTGTCGAG TTTGCCACCT GA
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| Protein sequence | MKNGVISGLT RRRFLALSAG ALCGASSVAA ASRPVTRWQG TALGADASAQ LVGLDPASAS
DILVGLQREL RRLETLFSLY RPESQVSRLN REGRLDAPAP ELLEVLAQCD ALHRGTGGAF
DPTTQPLFAT FAQAAAAGRT PSGDEVARAR AAVGWHHLRI GTDSVAFARP GGQLTLNGIA
QGYISDRIAA WLRDRGLTDI LLEAGEIVAL GHGPDATPWR CRIADAAGTS RRELRLRDRA
IATSAPDAMT LAGARHIFDP ASGRSADRGR MTSVSAPAAM LADGLSTALC VLPPESHATV
IARFPGARVE FAT
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