Gene Dshi_3161 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3161 
SymbolnapC 
ID5712217 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3325753 
End bp3326466 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content61% 
IMG OID641269088 
Productcytochrome c-type protein NapC 
Protein accessionYP_001534495 
Protein GI159045701 
COG category[C] Energy production and conversion 
COG ID[COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGATT CCCCCGAAAA AGATCCGCGT CGCAAAGGGC TCATGGGGCT TTGGGACCGG 
TTCTGGCTCC CCACCACGGT TTTCAGCGTG GGCTTCGTCC TGATCGGCGG CTTCGTTGCA
GGTATCCTGT TCTGGGGCGG CTTTCACTGG ACGCTGGAGG CAACGAACAA GGAAGAGTTC
TGTGTCTCCT GCCACACCAT GGAAACCAAT CTGGGCGAGT ACCGCGAGAC GATCCATTAC
AACAACCACT CCGGGGTGCG GGCGGTCTGT GCGGACTGCC ACGTGCCAAA GGAATGGAAC
CACAAGATGA AGGCCAAGAT CATCGCGGTG AAGGATGTCT ACCACGAAAT CGTGGGGACG
ATCTCGACCC CCGAGGATTA CGAGGAGCAC CGCCTGGCCA TGGCGTCGGC CGTCTGGACG
AAGATGAAGA AATCCAACAG CCGGGAGTGC CGCAACTGCC ACGAGTTCGA ATACATGGAC
TTCACCCTGC AGGAAAACCG TGCCGCGGTT GAACACCAGA GGGCCATCGA CACCGGCATG
ACCTGCATCG ATTGTCACCA GGGCATCGCG CACAGCCTGC CGCCCGGTCA CCTGGAGGAA
TACCAGCGCA TCACCCGCGA ACTGGCAGGG CCGATGGCCA GCCATGCCGA CGAGCCGCTG
GCAAGCAACA CCTCCCGTCT GCGCAACTAT CTGGACACAG CTCCGGCAGA CTGA
 
Protein sequence
MADSPEKDPR RKGLMGLWDR FWLPTTVFSV GFVLIGGFVA GILFWGGFHW TLEATNKEEF 
CVSCHTMETN LGEYRETIHY NNHSGVRAVC ADCHVPKEWN HKMKAKIIAV KDVYHEIVGT
ISTPEDYEEH RLAMASAVWT KMKKSNSREC RNCHEFEYMD FTLQENRAAV EHQRAIDTGM
TCIDCHQGIA HSLPPGHLEE YQRITRELAG PMASHADEPL ASNTSRLRNY LDTAPAD