| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3131 |
|---|
| Symbol | ugpE1 |
|---|
| ID | 5710983 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3299407 |
|---|
| End bp | 3300204 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641269058 |
|---|
| Product | sugar ABC transporter |
|---|
| Protein accession | YP_001534465 |
|---|
| Protein GI | 159045671 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.471841 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAAC GCAGTCTCAT CCCGATCTTC TACATCCTGT TCCTGATGCT GCCGATCTAC
TGGCTGGTGA CGATGTCGTT CAAGACCACG AACGAGATCC TGGCGGGCTT CACGCTTTTC
CCGCAAACCT TCACGCTGGA CAGCTACATC ACCATCTTCA CCGACCCGAC CTGGTACTGG
GGCTATATCA ACTCGATCAT CTACGTGTCG CTGAACACCG TGCTGTCGGT CGCGGTGGCC
CTGCCCGCGG CCTATGCCTT CTCGCGCTAC CGGTTTCTCG GCGACAAGCA GCTGTTCTTC
TGGCTGCTCA CCAACCGCAT GGCGCCCGCC GCGGTCTTCG CCCTGCCGTT CTTCCAGCTC
TATTCCTCGG TGAAGATCTT CGACACCCAC CTCGCCGTGG CCCTGGCGCA CACGCTCTTC
AATGTCCCAC TGGCGGTCTG GATCTTGGAG GGGTTCATGC GCTCGATCCC CAAGGAGCTG
GACGAGACCG CCTATGTCGA CGGCTACTCC TTCCCGCGCT TCTTCATCAA GATCTTCCTG
CCCAATATCG GCGCGGGCGT GGGCGTGGCG GCGTTCTTCT GCTTCATGTT CTCCTGGGTG
GAGATGCTGC TGGCCAAGAC CCTGACGGCG GTCGAAGCCA AGCCCATCGC CGCGGTGATG
ACCCGCACAG CGTCCAGCGC GGGCTACGAG CTGGGCCTGC TGGCGGCCGC CGGAACGCTG
ACCATCATTC CCGGCGCGAT CGTGATCTAT TTCGTGCGCA ACTACATCGC GCGCGGCTTC
GCCATGGGGA GGGTGTGA
|
|---|
| Protein sequence | MRKRSLIPIF YILFLMLPIY WLVTMSFKTT NEILAGFTLF PQTFTLDSYI TIFTDPTWYW
GYINSIIYVS LNTVLSVAVA LPAAYAFSRY RFLGDKQLFF WLLTNRMAPA AVFALPFFQL
YSSVKIFDTH LAVALAHTLF NVPLAVWILE GFMRSIPKEL DETAYVDGYS FPRFFIKIFL
PNIGAGVGVA AFFCFMFSWV EMLLAKTLTA VEAKPIAAVM TRTASSAGYE LGLLAAAGTL
TIIPGAIVIY FVRNYIARGF AMGRV
|
|---|
| |