| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3127 |
|---|
| Symbol | ugpB2 |
|---|
| ID | 5710979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3294602 |
|---|
| End bp | 3296341 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641269054 |
|---|
| Product | sugar ABC transporter |
|---|
| Protein accession | YP_001534461 |
|---|
| Protein GI | 159045667 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAGT ATCTACTCTC CGCCGTGGCA GCTGGCGCTG TCATCGCGGG GCAAAGCGGA
GCTATGGCCG ACGAGGCCGC GGCCCAACGC TGGATCGACG AAGAATTCCA GCCATCCACG
CTCAGCAAGG AAGAGCAACT CGAAGAGATG CGCTGGTTCA TCCAGGCGGC CGAACCGTTC
GCCGGGATGG AAATCAACGT GCTGTCGGAA GGCATTCCGA CCCACAGCTA CGAATCCGAG
GTCCTCACCC GGGCTTTCGA GGAAATCACC GGCATCAAGG TCAACCACCA GATCCTCGGC
GAGGGCGAAG TGGTCCAGGC GGTGCAGACC CAGATGCAGA CCGGGCGCAA CCTCTATGAC
GGCTACGTCA ATGACAGCGA CCTGATCGGC ACCCACTCGC GGCTGCAACT GGCCTACAAC
CTGACCGAGC AGATGGCGGG CGACTGGGCG GCGACGACCT CGCCGACACT GGATCTCGAA
GACTTCATGG GCATCCAGTT CACCACCGGC CCGGACGGCA ACCTCTACCA GCTGCCCGAC
CAGCAATTCG CGAACCTCTA CTGGTTCCGC AAGGACTGGT TCGACGACGA AGCCAACAAG
GCCGCGTTCA AGGAAAAATA CGGCTACGAG CTGGGCGTGC CGGTGAACTG GTCCGCCTAT
GAGGACATCG CCGAATTCTT CACCAACGAC GTGCAGGAAA TCGACGGCGT CCGCATCTAC
GGCCACATGG ACTACGGCAA GCGCGCCCCG GACCTCGGCT GGCGCATGAC CGACGCGTGG
CTGTCGATGG CCGGCGCCGG CGACGTGGGC GAGCCCAACG GCGTCCCCGT GGACGAATGG
GGCATCCGCA TGGAAGCGGG CACCTGCAAC CCGGTCGGCG CCTCCGTCAC CCGCGGCGGG
GCGGCCAATG GCCCGGCGGC GGTCTACGCG ATCCGCAAAT GGGACGAATG GCTGCGGAAC
TACGCGCCTC CGGGGGCGGC CAGCTACGAC TTCTACCAGT CGCTGCCCGC GCTCAGCCAG
GGCAACGTCG CCCAGCAGAT CTTCTGGTAC ACCGCCTTCA CCGCCGACAT GGTGAAGCCG
AAATCCGAAG GCAACAACAC CGTGGATGAC GACGGCAACC CGCTATGGCG GATGGCCCCC
TCGCCCCACG GCCCCTACTG GACCGAAGGC CAGAAGGTCG GTTACCAGGA CGTCGGCTCC
TGGACCTTCC TGAAATCCAC CCCGTCCGAC CGGGCACAGG CGGCCTGGCT CTATGCCCAG
TTCGTCACCT CCAAGACCGT GGATGTGAAG AAGTCCCATG TGGGCCTGAC CTTCATCCGC
GACAGCAGCG TGCGCCACGA GAGCTTCACC GAACGCGCGC CCAAGCTCGG CGGCCTGGTG
GAATTCTACC GCTCCCCGGA CCGGACCGCA TGGTCGCCTA CAGGCATCAA CGTGCCGGAC
TATCCGAAGC TGGCGCAGAT CTGGTGGCAG CAGATCGGGG ACGTGAACTC CGGTGCCTTC
ACCCCGCAGG AAGCCATGGA CCGTCTCGCC GAGGAGATGG ACATCACCAT GGCCCGGATG
CAGCAGGCTG ACGAGGCCGC CGGTGTCTAT GGCGGCTGCG GCCCGCGCCT GAACGAAGAG
CGCGACGCCG AGTACTGGTT CAGCCAGCCC GGCTCGCCCA AGCCCAAGCT CGCCAACGAG
AAGCCCCAGG GCGAGACCGT CAACTATGAC GAGCTTGTCG CCCGCTGGCA GGCGCAGTGA
|
|---|
| Protein sequence | MRKYLLSAVA AGAVIAGQSG AMADEAAAQR WIDEEFQPST LSKEEQLEEM RWFIQAAEPF
AGMEINVLSE GIPTHSYESE VLTRAFEEIT GIKVNHQILG EGEVVQAVQT QMQTGRNLYD
GYVNDSDLIG THSRLQLAYN LTEQMAGDWA ATTSPTLDLE DFMGIQFTTG PDGNLYQLPD
QQFANLYWFR KDWFDDEANK AAFKEKYGYE LGVPVNWSAY EDIAEFFTND VQEIDGVRIY
GHMDYGKRAP DLGWRMTDAW LSMAGAGDVG EPNGVPVDEW GIRMEAGTCN PVGASVTRGG
AANGPAAVYA IRKWDEWLRN YAPPGAASYD FYQSLPALSQ GNVAQQIFWY TAFTADMVKP
KSEGNNTVDD DGNPLWRMAP SPHGPYWTEG QKVGYQDVGS WTFLKSTPSD RAQAAWLYAQ
FVTSKTVDVK KSHVGLTFIR DSSVRHESFT ERAPKLGGLV EFYRSPDRTA WSPTGINVPD
YPKLAQIWWQ QIGDVNSGAF TPQEAMDRLA EEMDITMARM QQADEAAGVY GGCGPRLNEE
RDAEYWFSQP GSPKPKLANE KPQGETVNYD ELVARWQAQ
|
|---|
| |