| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3106 |
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| Symbol | rluA |
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| ID | 5710958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3272254 |
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| End bp | 3272913 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641269033 |
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| Product | ribosomal large subunit pseudouridine synthase A |
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| Protein accession | YP_001534440 |
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| Protein GI | 159045646 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.774477 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCGCCGA TCCCGCCAGA TACCTATGCT CCGCCCCAGG AGCCGCTGCG CCTGGTCCAC
GAGGATGCGC ATCTTCTGCT GGTGGAGAAA CCCTCCGGGC TCTTGTCGGT GCCCGGGCGC
GGGCCCGAGT TGGCTGATTG CCTGCTGAGC CGGGTGCAGG GGGCGTTTCC CGACGCGCTC
CTCGTGCATC GGCTGGACCG GGACACATCG GGGCTGATGG TGTTCGCGCT GACCGCCCAT
GCCCAGCGGC ACCTCGGCCT GCAATTCGAA AAACGCCAGA TCAAGAAGAG CTATGTGGCG
CGGGTCTGGG GGCAGGTTGC GGAGGCGACG GGGACGGTCG ATCTGCCGCT GATCGTGGAC
TGGCCGAACC GTCCCTTGCA GAAGGTCGAT CCCGAAACGG GCAAGGCCGC CGTGACCGAT
TGGCGCGTCC TGAAGCGGTC CGAGGCGGAA ACGCGCGTGC GGCTCTTTCC CAAAACCGGG
CGCTCGCACC AGTTGCGGGT CCATATGCAA GCGTTGGGGC ATCCGATTCT CGGGGATCCG
TTCTACGCGG AGGGCGCGGC ACGGGCATTT CCGCGGCTGA TGCTGCATTC GGAGTCCCTG
CGATTGCGGC ATCCGGATGG CGGTGTGGGC ATGACGTTTC GGTCAAAACC GCCCTTCTGA
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| Protein sequence | MPPIPPDTYA PPQEPLRLVH EDAHLLLVEK PSGLLSVPGR GPELADCLLS RVQGAFPDAL
LVHRLDRDTS GLMVFALTAH AQRHLGLQFE KRQIKKSYVA RVWGQVAEAT GTVDLPLIVD
WPNRPLQKVD PETGKAAVTD WRVLKRSEAE TRVRLFPKTG RSHQLRVHMQ ALGHPILGDP
FYAEGAARAF PRLMLHSESL RLRHPDGGVG MTFRSKPPF
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