| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3033 |
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| Symbol | rsmB1 |
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| ID | 5710885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3201216 |
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| End bp | 3202547 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641268960 |
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| Product | ribosomal RNA small subunit methyltransferase B |
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| Protein accession | YP_001534367 |
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| Protein GI | 159045573 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.455858 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCACCC CCGCCCTCGA TCCCGCACGG GCCGCCGCCC TGGCCCTTTT GGCGGGTGTG
CTGTCCGAGC GCATGTCCCT GGCCGACCAG ACCGCCCACC CCAAAGGGCC TTTTGCGGAG
TGTGCCCCGG CGGAGCGTGC CCGGGCGCAG CGGCTGGCCA CCGGCGTGCT GCGCCACCTG
CGGACCTGCG ACCAGATGCT CGGGCCGCAC CTTCGCATGC CGCCCTATCC CGCGATCCAC
AATATTTTGC GGCTCGGCGC CTATGAGCTC TGCGCGCTGG GCGAGGCCCC GCACGGGGTC
GTCCATGCCG CGGTCGACCT GGCCCGGGCC GAGGACCCGC AAAGCCGCGC GCCGGGGCTG
GTCAACGCGG TGCTGCGCAA GGTCGCCGAT CTCGGCCCCG CGCTTTGGGC CGCGGCGCCG
CCCGCGCAGC TGCCCAAGCC GTTCCGCAAG GGGTTGGTCA AGGTTTGGGG CAACAAGACC
GTTATCGGTT TCGAGGCCGC CCACGGGGCG GGGGCGCCAC TGGACCTGAC CCTGCGCGAT
CCGTCCGAAG CCGCGCTCTG GGCTGATCGG CTCGGGGCGG TGGTGCTGCC CACGGGGGGG
CTGCGCCTGT CCGATGCGGG GCAGGTCAGC CAGCTGCCGG GCTATGCCGA GGGCGCGTGG
TGGGTGCAGG ATGCCGCGGC GAGCCTGCCC GCGCGTGCGC TCGGGCCCGT GGTCGGGGCG
CGGGTGCTGG ACCTGTGCGC AGCACCGGGG GGCAAGACCC TGCAACTGGC CGCGGCGGGG
GCGCAGGTTA CCGCGCTCGA TATCTCGGAC GCGCGTGTGG CGCGGCTGCG GGAGAACCTG
GCCCGCACGG GGCTGGCGGC GGAGGTCGTG ATCGCGGACG GGCTGACCTA TGCCGCCGAA
ACGCCGTTCG ATGCGATCCT GCTCGATGCG CCTTGCTCGG CCACGGGGAC GATCCGGCGG
CACCCGGATC TGCCCTTCCT GCGCGACCTG AGCGATCTGT CGGACCTGAC GGCGTTGCAG
GCCGGGCTGC TCGACCGGGC GGTGGGGCTG TTGCGGCCCG GTGGGCGGCT GGTCTTTGCC
ACCTGTTCGC TCTTGCCTGC CGAAGGGGAA GACCAGGTCG CCGCGGCGCT GGCGCGCCAT
CCGGGCCTGG CGCAAGTGCC GCTGAGCGAC CTGGCCGGTA GCGCGGCGGA GTGGCTGACC
GACACGGGCG CCCTGCGCCT GCGACCGGAT TTCTGGGCCG AGCGCGGCGG GCTGGACGGG
TTCTTCATCG CGGCGCTCGC AAAACCGGGG TACGCGCGTT TTGGCCATGA CTCGGGGTCC
GGCACATCCT AG
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| Protein sequence | MATPALDPAR AAALALLAGV LSERMSLADQ TAHPKGPFAE CAPAERARAQ RLATGVLRHL
RTCDQMLGPH LRMPPYPAIH NILRLGAYEL CALGEAPHGV VHAAVDLARA EDPQSRAPGL
VNAVLRKVAD LGPALWAAAP PAQLPKPFRK GLVKVWGNKT VIGFEAAHGA GAPLDLTLRD
PSEAALWADR LGAVVLPTGG LRLSDAGQVS QLPGYAEGAW WVQDAAASLP ARALGPVVGA
RVLDLCAAPG GKTLQLAAAG AQVTALDISD ARVARLRENL ARTGLAAEVV IADGLTYAAE
TPFDAILLDA PCSATGTIRR HPDLPFLRDL SDLSDLTALQ AGLLDRAVGL LRPGGRLVFA
TCSLLPAEGE DQVAAALARH PGLAQVPLSD LAGSAAEWLT DTGALRLRPD FWAERGGLDG
FFIAALAKPG YARFGHDSGS GTS
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