Gene Dshi_3030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3030 
SymbolatpB1 
ID5710882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3198004 
End bp3198750 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content62% 
IMG OID641268957 
ProductF0F1 ATP synthase subunit A 
Protein accessionYP_001534364 
Protein GI159045570 
COG category[C] Energy production and conversion 
COG ID[COG0356] F0F1-type ATP synthase, subunit a 
TIGRFAM ID[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.311093 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCGACCG AAGAAGGCAC CGGCCTCACA TTCTATCCGA TGGATCAGTT CATCGTGTCT 
CCCCTGTTCG GGGATGGACC GGTGCACTTC TACACCCCGA CCAACGTGAC CTTGTGGATG
GCCCTGGCCG TGGCGGCGAT CGCGCTTCTG CTGGTGGCGG GGACCCGCGG GCGCGCTGTG
GTTCCGAGCC GGGCGCAGTC GATTGCCGAA CTGGCCTACG GGTTTGTCTA CAAGATGGTC
GAGGACGTGA CCGGCAAGGA CGGGATCAAG TATTTCCCGT ATATCTTCAC GCTCTTCATG
TTCATCCTGG TGGCCAACTT CCTCGGGCTG ATCCCGATGA GCTTCACCAC CACCTCGCAT
ATCGCGGTGA CCGCGGTGCT GGCGCTGGCG GTGTTCATCA CCGTGACCGT GATCGGTTTC
GTCAAGAACG GCGCGGGTTT CCTGAGCTTG TTCTGGGTGG CCTCCGCGCC CCTGGCGCTG
CGCCCGATCC TCGCGGTGAT CGAGATCATC TCCTACTTCG TCCGTCCGGT CAGCCATTCC
ATTCGTCTGG CGGGCAACAT GATGGCGGGC CACGCGGTTC TGAAGGTGTT CGCGGGCTTT
GCCCAGGTGG CGGCCGTAGC CCCCATCGCG ATCATCGGCG TCATGGCGAT CTACGGGCTC
GAAGTTCTGG TGTCGGCCAT CCAGGCCTAC GTCTTCACCA TCCTGACCTG CGTGTATCTC
AAGGACGCAC TGCACCCGCA TCACTAA
 
Protein sequence
MATEEGTGLT FYPMDQFIVS PLFGDGPVHF YTPTNVTLWM ALAVAAIALL LVAGTRGRAV 
VPSRAQSIAE LAYGFVYKMV EDVTGKDGIK YFPYIFTLFM FILVANFLGL IPMSFTTTSH
IAVTAVLALA VFITVTVIGF VKNGAGFLSL FWVASAPLAL RPILAVIEII SYFVRPVSHS
IRLAGNMMAG HAVLKVFAGF AQVAAVAPIA IIGVMAIYGL EVLVSAIQAY VFTILTCVYL
KDALHPHH