| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3016 |
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| Symbol | deoC |
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| ID | 5710868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3184761 |
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| End bp | 3185780 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641268943 |
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| Product | deoxyribose-phosphate aldolase |
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| Protein accession | YP_001534350 |
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| Protein GI | 159045556 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0274] Deoxyribose-phosphate aldolase |
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| TIGRFAM ID | [TIGR00126] deoxyribose-phosphate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.0930267 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.304024 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCAGCA CCCCCACGGA CACCACGACC ACGGGCCAAC AGATCGACCT GCACCGGGGG
CACCTGCCCG ACACGGTTCT GCCCCGCAAT CCGGGGCTTC CGCTGGACCT CGACTGGGTG
CGGTCGGCGG CAGTGAACAC CTCGGCCGTG GAACGCCGGG CCGCAAGCCT GCCCGGGCGG
AGATCGGTCA AGAAGGACCA TCAGGCGGCC TGGCTGCTGA AGGCGGTCAC GTTGATCGAC
CTGACCACGC TGGCGGGCGA CGACACGGCT GGCCGGGTGC GGCGGCTATG TGCCAAGGCG
CGCCAGCCCG TCGCACCGGA GGTTCTGGCC GCGCTCGGCA TGGGGCCGGT CACCACCGGG
GCGGTCTGCG TCTATCACGA CATGGTCCAC GTGGCGGTCG AGGCGCTGGA GGGCTCCGGC
ATCCCCGTCG CCGCCGTCTC CACCGGGTTT CCCGCCGGCC TGTCGCCCTT CCACCTGCGC
GTGGCCGAGA TCGAGGAAAG CGTTGCGGCG GGGGCTGCCG AGATCGACAT CGTGATCTCG
CGCCGCCATG TCCTGACCGG CAATTGGCAA GCGCTCTATG ACGAGATGCG GGCGTTTCGC
GCGGCCTGCG GCGACGCCCA TGTGAAGGCG ATCCTGGCCA CGGGCGAGTT GGGGGACCTG
GGCAACGTCG CCCGCGCGAG CCTTGTCTGC ATGATGGCGG GCGCGGATTT CATCAAGACC
TCCACCGGCA AGGAGAGCGT GAATGCCACC CTGCCCGTGA GCCTCGTGAT GATCCGGGCG
ATCCGGGACT ATGAGGCCGC GACGGGGGTG AAGGTCGGCT ACAAGCCTGC GGGCGGGATC
TCCAAGGCCA AGGATGCGCT GGTCTACCTC AGCCTGATCA AGGAAGAGCT GGGCGATCGG
TGGCTGCAGC CGGATCTGTT CCGGTTCGGG GCCTCGTCTC TCTTGGGCGA TATCGAGCGG
CAGTTGGAGC ACCACGTCAC CGGCGCCTAT TCCGCGACGC ACCGGCACGC GCTGGGCTGA
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| Protein sequence | MSSTPTDTTT TGQQIDLHRG HLPDTVLPRN PGLPLDLDWV RSAAVNTSAV ERRAASLPGR
RSVKKDHQAA WLLKAVTLID LTTLAGDDTA GRVRRLCAKA RQPVAPEVLA ALGMGPVTTG
AVCVYHDMVH VAVEALEGSG IPVAAVSTGF PAGLSPFHLR VAEIEESVAA GAAEIDIVIS
RRHVLTGNWQ ALYDEMRAFR AACGDAHVKA ILATGELGDL GNVARASLVC MMAGADFIKT
STGKESVNAT LPVSLVMIRA IRDYEAATGV KVGYKPAGGI SKAKDALVYL SLIKEELGDR
WLQPDLFRFG ASSLLGDIER QLEHHVTGAY SATHRHALG
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