| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3004 |
|---|
| Symbol | |
|---|
| ID | 5710856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3170785 |
|---|
| End bp | 3171441 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641268931 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_001534338 |
|---|
| Protein GI | 159045544 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.729807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACGC GCCGCGCAGA CACCATTGCC CAGGAACTGG AGAACATGAT CCTCACCGGA
GGGTTCTCGG ACGGCGACCG GCTGAACGAG ATCAAGCTGG CAGAGCATTT CGGTGTGTCG
CGCACCCCGA TTCGCGAGGC GTTCTATCAC CTCGGGACGG CGGGTCTGGT GGAACAAATT
CCGCGCAGAG GCGTGTTTGT CCGCCATCCA GGCCCAATGG AGCTGATCGC GCTGTTCGAG
TACATGGCCG AGTTGGAGGC CGCCTGCGGC CGCCTGGCCG CCCCCCGGAT CAGCGACGCT
GCGCTGGACG ATCTGGAGCA GGCCAACGCC ACCTGCGAGG CCGCGGTGGA GGCCGCGGAC
AGCGATGGCT ACTACCGGGA GAACGAGCGC TTCCACCACA TCATTTACGC CGAATCCGGG
AACAGTTTTC TGCAAAACGA CGTAATACGT CTGCACAAGC GCCTCAAACC CTTCCGCAGG
ATCCAATTGC AGCTGCGCGG GCGGCTGTCG CAGTCCATGG CCGAGCACCG CGCGATCGTC
GCCGCCCTGG CCGCCGGAGA CGCGATTGCC GCCGGGGAGG CCCTGCGCAG CCATGTCGCC
GTGCAGGGCG AAAAGTTCCA TCATGTGCTC GCCAGCATGC AGAAAGTGGC GGAGTAA
|
|---|
| Protein sequence | MDTRRADTIA QELENMILTG GFSDGDRLNE IKLAEHFGVS RTPIREAFYH LGTAGLVEQI
PRRGVFVRHP GPMELIALFE YMAELEAACG RLAAPRISDA ALDDLEQANA TCEAAVEAAD
SDGYYRENER FHHIIYAESG NSFLQNDVIR LHKRLKPFRR IQLQLRGRLS QSMAEHRAIV
AALAAGDAIA AGEALRSHVA VQGEKFHHVL ASMQKVAE
|
|---|
| |