| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2909 |
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| Symbol | polA |
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| ID | 5710760 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3067301 |
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| End bp | 3070099 |
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| Gene Length | 2799 bp |
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| Protein Length | 932 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641268835 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001534243 |
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| Protein GI | 159045449 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.033314 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.843304 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTCG GCAAGGGACA TCACCTGCAT CTGATCGACG GATCGGCGTT CATTTTCCGC
GCCTATCACG CGTTGCCGCC GCTGACACGG AAGTCCGACG GGCTGCCCGT CGGGGCGGTG
TCGGGCTTCT GCAACATGCT GCAGCGCTAT GTCGAAGGGA ACGCCGGGGG CGACGTGACC
CATGTGGCGG TGATCTTCGA CAAGGGCAGC CATACCTTTC GCAATGATCT TTACGACCAG
TACAAGGCCA ACCGCGAGGC GATGCCCGAG GACCTGCGCC CGCAGATCCC CCTGACCCGG
ACCGCGACCG AGGCGTTCAA CATCGCCTGC AAGGAGATGG AGGGGTTCGA GGCGGACGAT
ATCATCGCGA CGCTGGCCTG CCAGGCGCGC GAGGCCGGGG GGCGCTGCAC GATCATCAGC
TCGGACAAGG ACCTGATGCA GCTGGTCGGC GGCGGGGTCG AGATGCTGGA TGCGATGAAG
AACAAGACCA TCGACGTGGA CGGGGTGTTC GAGAAATTCG GCGTGGGCCC CGACCGGGTG
GTCGATGTGC AGGCGCTGGC CGGGGATTCG GTGGACAACG TGCCCGGCGC GCCGGGGATC
GGGATCAAGA CCGCGGCGCT GCTGATCAAC GAGTATGGCT CGCTCGAGGA GCTTCTGGAC
CGGGCCGGGG AGATCAAGCA GCCCAAGCGC CGCCAGACCC TGATCGAGCA TCGCGCCCAG
ATCGAGCTGT CGAAGCGGCT GGTGCAGCTC GATTGCGACA TGGAGCTGGA TTTCACAATC
GAGGATCTGG AGGTGCGCGA TCCGGAGCCT GAGACCCTGC TGGGGTTTTT GGCGGAGATG
GAGTTCCGCA CGCTGACAAA GCGGATCTCG GGCGCGTTGG GGGTGGAGGC GCCCGCCGTG
CCGGAGCCCG CAGCGACGAC GGCCTCGCCA GAGGCGGAGG AGCACCCCCC CCTGAGCGCC
TCGGAGCATG TCACCATCCG CGACGCGGAA ACCCTGCAAA GCTGGATCGA CGCGATCCAT
GCGCGCGGGG TGGTGGCGGT GGATACCGAG ACCACGGGCC TCAACGAGAT GCGCGCGGAT
CTGGTGGGCG TGTCGCTCTG CGTGGATCCG GGGCGCGCGG CCTACCTGCC GCTGGCGCAC
AAGGACGGTG GCGGGGCCGA CGACCTGTTC GGCGGGGAGG CGAAGCTGGC CGAGGGGCAG
CTGGATTTTG AGACCGCGCT TGGGATGCTC AAGCCCGTGC TGGAGGACCC TGCGGTCCTG
AAGATCGGGC AGAACATGAA ATACGATGCC AAGATCCTCG CCCGGAACGG GATCACGGTG
GCGCCCATCG ACGACACGAT GCTGCTGAGC TACGCGCTCC ATGCCGGGTT GCACGGGCAC
GGGATGGACG CGCTGTCGGA GCGGTATCTC GACCACACGC CGATCCCGAT CAAGACCCTG
CTGGGCACCG GCAAATCCGC GATCACTTTC GATTTCGTGC CCATCGAGGA GGCGACGAAA
TACGCCGCCG AGGATGCGGA AATCACGCTG CGCCTGTGGC AGCGCTTGAA GCCGCGCCTG
CATCTGGCGC AGGTCACCCG CGTCTACGAG TGGATGGAGC GGCCCATGGT GCCGGTTCTG
GCCGAGATGG AGATGCGCGG GATCAAGGTC GATCGCGACA CCCTGAGCCG GATGTCGAAC
GCGTTCGCGC AGAAGATGGC CGGGCTGGAG GCGGAAATCC ACGAACTGGC GGGGGAGAGT
TTCAACGTGG GCAGCCCCGC CCAGCTGGGC GAGATCCTGT TCGAGAAGAT GGGCTTCGAG
GGGGGCAAGA CCGGCAAGTC GGGCAAGTAT TCGACCCCGG CGGATGTGCT GGAGGATCTC
GCGACCGAGC ATGACCTGCC GCGCCGGGTG CTCGACTGGC GGCAGCTGTC GAAGTTGAAA
TCGACCTACA CGGACGCCTT GCAGGATCAT ATCAACCCCG AGACCGGGCG GGTGCATACG
TCCTACTCGA TTGCCGGGGC GAATACGGGG CGGTTGGCTT CGACCGATCC GAACCTGCAG
AACATCCCCG TGCGCTCCGA GGAGGGGCGG CGCATTCGCG AGGCCTTCGT GGCGGAGCCG
GGGCATGTGC TCGTGTCGCT CGACTATAGC CAGATCGAGC TGCGGATCCT CGCCCATATC
GCCGGGATCG ACGCGCTGAA GACCGCGTTC CGGGACGGGC TGGACATTCA TGCGATGACC
GCGTCGGAGA TGTTCGATGT GCCGCTGGAC GAGATGACGC CGGAGGTGCG GCGCCAGGCC
AAGGCGATCA ATTTCGGGGT GATCTACGGG ATTTCGGGCT TTGGCCTCGC GCGGAACCTG
CGGATCCCGC GGGCGGAGGC GCAGGCCTTC ATCGACACCT ATTTCGAGCG GTTCCCCGGC
ATCCGGGCCT ATATGGACGA CACGGTCGCC TTCGCGAAGG AGCATAAATA CGTGCAGACC
CTGTTCGGGC GGAAGATCCA CACGCCGGAG ATCGGCGCGA AGGGGCCCCA GGCGGGCTTC
GCCAAGCGCG CGGCGATCAA CGCGCCGATC CAGGGAACGG CGGCGGATAT CATCCGGCGC
GCGATGGTGC GGATGCCCGC GGCGATTGCC GACCTGCCCG CGCGGATGCT GCTCCAGGTC
CATGACGAGC TGATCTTCGA GGTGGAGGAA GACGCGGTGG ACCGGGTGAT CCCGGCGGTG
CGCCAGGTGA TGGAGGGGGC CGCCGCGCCG GTGGTGCATC TCGATGTGCC GCTGACGGTG
GATGCGGGCC AGGGGCGAAG CTGGGCGGAG GCGCATTAG
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| Protein sequence | MAFGKGHHLH LIDGSAFIFR AYHALPPLTR KSDGLPVGAV SGFCNMLQRY VEGNAGGDVT
HVAVIFDKGS HTFRNDLYDQ YKANREAMPE DLRPQIPLTR TATEAFNIAC KEMEGFEADD
IIATLACQAR EAGGRCTIIS SDKDLMQLVG GGVEMLDAMK NKTIDVDGVF EKFGVGPDRV
VDVQALAGDS VDNVPGAPGI GIKTAALLIN EYGSLEELLD RAGEIKQPKR RQTLIEHRAQ
IELSKRLVQL DCDMELDFTI EDLEVRDPEP ETLLGFLAEM EFRTLTKRIS GALGVEAPAV
PEPAATTASP EAEEHPPLSA SEHVTIRDAE TLQSWIDAIH ARGVVAVDTE TTGLNEMRAD
LVGVSLCVDP GRAAYLPLAH KDGGGADDLF GGEAKLAEGQ LDFETALGML KPVLEDPAVL
KIGQNMKYDA KILARNGITV APIDDTMLLS YALHAGLHGH GMDALSERYL DHTPIPIKTL
LGTGKSAITF DFVPIEEATK YAAEDAEITL RLWQRLKPRL HLAQVTRVYE WMERPMVPVL
AEMEMRGIKV DRDTLSRMSN AFAQKMAGLE AEIHELAGES FNVGSPAQLG EILFEKMGFE
GGKTGKSGKY STPADVLEDL ATEHDLPRRV LDWRQLSKLK STYTDALQDH INPETGRVHT
SYSIAGANTG RLASTDPNLQ NIPVRSEEGR RIREAFVAEP GHVLVSLDYS QIELRILAHI
AGIDALKTAF RDGLDIHAMT ASEMFDVPLD EMTPEVRRQA KAINFGVIYG ISGFGLARNL
RIPRAEAQAF IDTYFERFPG IRAYMDDTVA FAKEHKYVQT LFGRKIHTPE IGAKGPQAGF
AKRAAINAPI QGTAADIIRR AMVRMPAAIA DLPARMLLQV HDELIFEVEE DAVDRVIPAV
RQVMEGAAAP VVHLDVPLTV DAGQGRSWAE AH
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