| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2668 |
|---|
| Symbol | |
|---|
| ID | 5713566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2824868 |
|---|
| End bp | 2825659 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641268592 |
|---|
| Product | putative ABC-2 type transporter |
|---|
| Protein accession | YP_001534002 |
|---|
| Protein GI | 159045208 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.149875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCCT ATCTGATCGC CCTTTTCGCC ATCGTCGAGC GCGAAGCCTT CCGCTTTTTG
CAACAGCGCG AGCGCTTCGT CGCGGCCCTC GTGCGCCCCC TCGTCTGGCT GCTGGTCTTC
GCCGCGGGCT TCCGCGCGGC CCTGGGACTC AGCATCATCC CGCCCTACCA GACCTACATC
ACCTACGAGG TCTACATCGT GCCCGGCCTG TGCGGAATGA TATTGCTTTT CAATGGGATG
CAGTCGTCGC TCAGCCTCGT CTACGACCGG GAGATGGGCT CCATGCGCCT CCTGCTGACC
TCGCCCCTGC CGCGCTGGTG GCTCCTGTTC TGCAAGCTCA CGGGCGGCAC CCTGATCTCC
ATCGCCCAGG CCTATGCGTT TCTCGCCATC GCCGCGCTTT TCGGCATCCA GATGCCCTGG
CACGGCTACC TGCTGGCCTT TCCCGCGCTG CTCGTGGCGG GCCTGATGCT CGGCGCGCTC
GGGCTGGCAT TGTCGAGCTT TATCAAGCAG TTGGAGAATT TCGCCGGGGT GATGAACTTC
GTGATCTTCC CGATGTTCTT CCTCTCCTCC GCGCTCTATC CGCTGTGGAA AATGGCCGAA
AGTTCCGAAC TTCTGCATGA CATCTGCGCG CTCAATCCGT TCACCCACGG GGTCGAGCTG
ATCCGCTTCG CGCTCTACGG CGAGCTGAAC CTGCCCGCCC TGGGCTGGAC CACGCTGGCC
TGCGCGGGGT TCATGGCGCT GGCGCTCTGG GGCTACGACC CGGCCCGCGG CATGATCAAG
CGCAAGGGAT GA
|
|---|
| Protein sequence | MSPYLIALFA IVEREAFRFL QQRERFVAAL VRPLVWLLVF AAGFRAALGL SIIPPYQTYI
TYEVYIVPGL CGMILLFNGM QSSLSLVYDR EMGSMRLLLT SPLPRWWLLF CKLTGGTLIS
IAQAYAFLAI AALFGIQMPW HGYLLAFPAL LVAGLMLGAL GLALSSFIKQ LENFAGVMNF
VIFPMFFLSS ALYPLWKMAE SSELLHDICA LNPFTHGVEL IRFALYGELN LPALGWTTLA
CAGFMALALW GYDPARGMIK RKG
|
|---|
| |