| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2639 |
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| Symbol | carB |
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| ID | 5713537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2794515 |
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| End bp | 2797832 |
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| Gene Length | 3318 bp |
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| Protein Length | 1105 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641268563 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_001533973 |
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| Protein GI | 159045179 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.239677 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAAGA GAACCGATAT CAAGTCGATC ATGATCATCG GAGCCGGGCC CATCATCATC
GGGCAGGCCT GCGAGTTCGA CTATTCCGGG GCCCAGGCCT GCAAGGCGCT GCGCGAAGAG
GGCTACCGGG TGATCCTGGT CAACTCCAAC CCCGCCACCA TCATGACCGA CCCGGGCCTG
GCCGACGCCA CTTATATCGA GCCGATCACC CCCGAGATCG TCGCCAAGAT CATCGAGAAG
GAGCGCCCGG ACGCGCTCTT GCCGACCATG GGCGGTCAGA CCGGGCTGAA CACCTCGCTC
GCGCTCGAAG AGATGGGCGT GCTGGCGAAA TACGGGGTCG AGATGATCGG CGCCAAGCGC
GAAGCCATCG AGATGGCCGA GGACCGCAAG CTTTTCCGCG AGGCGATGGA TCGCCTCGGC
ATCGAGAACC CCCGTGCCAC CATCGCCACG ACCATGGACG AATGCATGGC TGCGCTGGAC
GATATTGGCC TGCCGGCGAT CATCCGGCCC GCCTTCACCC TCGGCGGGAC CGGGGGCGGC
GTGGCCTACA ACCGGGACGA TTACGAGCAT TTCTGCAAAT CCGGGCTCGA TGCCTCGCCG
GTCAACCAGA TCCTGATCGA CGAGAGCCTG CTGGGCTGGA AAGAGTTCGA GATGGAGGTG
GTCCGCGACA AGGCGGACAA TGCGATCATC GTCTGCGCCA TCGAGAACGT CGATCCGATG
GGCGTGCATA CGGGCGATTC GATCACCGTG GCCCCGGCGC TGACCCTGAC CGACAAGGAA
TACCAGATCA TGCGCAACGG CTCGATCGCC GTGCTGCGCG AGATCGGGGT GGAAACCGGC
GGCTCCAACG TGCAGTGGGC GGTCAACCCC GCCGACGGGC GCATGGTGGT GATCGAGATG
AACCCGCGGG TGTCGCGGTC CTCGGCGCTG GCCTCCAAGG CCACGGGCTT TCCCATCGCC
AAGATCGCCG CGAAACTTGC CGTGGGCTAT ACCCTGGACG AGCTCGACAA CGACATCACC
AAGGTCACGC CCGCCAGCTT CGAGCCGACC ATCGACTATG TCGTGACCAA GATCCCGCGC
TTCGCGTTCG AAAAATTCCC CGGCGCCGAG CCGAACCTGA CCACGGCGAT GAAATCCGTG
GGCGAGGCCA TGTCCATCGG CCGCACCTTC CACGAAAGCG TGCAGAAGGC GCTCGCCTCG
ATGGAGACCG GGCTGACCGG CTTCGACGAG ATCGCCATCC CCGGGATTTC TGCGGACCAC
AGGTCGGACG CCCCCGACAC CGCCGCCGTG GTCAAGGCAC TGGCCAGGCA GACGCCCGAC
CGGCTGCGCG TGATTGCCCA GGCCATGCGC CACGGGCTGA GCGATGACGA GATTCAGGCC
GCGACCTCAT ACGATCCGTG GTTCCTCGCG CGCATCCGCG AGATCGTCGA GACCGAGGCA
CAGGTGCGCC GCGACGGCCT GCCGCTGGAG GCCGAGGGCC TGCGCAAGCT CAAGATGATG
GGCTTCACCG ATGCGCGGCT GGCCAAGCTG ACGGGCCGGG ACGAGGGCCA GGTCCGCCGC
GCCCGCACCC GGCTCGGTGT GACCGCGCAG TTCAAGCGGA TCGACACCTG CGCGGCCGAG
TTCGAGGCCC AGACGCCTTA TATGTACTCG ACCTACGAAA CCCCGGTGAT GGGCGAGGCC
GAATGCGAAT CGCGGCCCAC GGACGCCACC AAGGTGGTCA TCCTCGGTGG CGGGCCGAAC
CGGATCGGCC AGGGGATCGA GTTCGACTAC TGCTGCTGCC ATGCGTGTTT CGCGCTGACC
GAGGCGGGCT ACGAGACCAT CATGGTCAAC TGCAACCCCG AGACCGTTTC GACCGATTAC
GACACCTCGG ACCGGCTCTA TTTCGAGCCG CTGACCTTCG AGCATGTGAT GGAGATCCTG
CGCGCCGAAC AGGAGAACGG CACGCTGCAC GGGGTGATCG TCCAGTTCGG CGGCCAGACC
CCCCTGAAGC TCGCCAATGC GCTGGAGGCC GAAGGCATCC CGATCCTCGG GACCACGCCC
GATGCCATCG ATCTGGCCGA GGATCGCGAG CGGTTCCAGG CGCTGGTCAA CGACCTGGGC
CTCAAACAGC CTCACAACGC CATCGCCAGC ACCGATGCCG AGGCCTTCGC CGCCGCGGGC
GACATCGGCT TCCCGCTGGT CATCCGGCCG TCCTATGTTC TGGGCGGGCG CGCGATGGAG
ATCGTGCGCG ACATGGGTCA GTTGGAGCGG TATATCGCCG AGGCGGTGGT GGTCTCGGGC
GACAGCCCGG TACTGCTCGA CAGCTATCTC GCCGGCGCGG TGGAGTTGGA CGTGGACGCG
CTCTGCGATG GGGAGAACGT TCATGTGGCG GGCATCATGC AGCATATCGA AGAGGCGGGC
GTCCATTCCG GCGACAGCGC CTGTTCCCTG CCGCCCTATT CGCTCTCCGA CGACGTGCTG
GCGCGCATTC GCGTGCAGAC CGAGGCACTG GCGCGCGCCC TGCGGGTCAA GGGCCTGATG
AACGTGCAAT TCGCGATCAA GGATGACGAG ATCTACCTGA TCGAGGTGAA CCCGCGCGCC
TCGCGCACCG TGCCCTTCGT GGCCAAGGCC ACCGACAGCG CAATCGCGTC CATCGCCGCC
CGGCTGATGG CGGGCGAGCC CCTGTCGAAT TTCCCGCTGC GCGACCCCCT GCCCCATGAC
GCACCCGAGG ACCAGCACCT GCCGATCGGC GACCCGATGA CGCTGGCGCA CCCGGATACG
CCCTGGTTCT CGGTCAAGGA GGCGGTTCTG CCCTTCGCGC GCTTCCCGGG CGTCGACACG
ATCCTCGGCC CGGAAATGCG CTCCACCGGG GAGGTGATGG GCTGGGACCG GTCCTTCCCC
CGCGCCTTCC TGAAGGCACA GATGGGCGCG GGCACCGTAC TGCCGACGGA AGGCACGGTG
TTCCTGTCGA TCAAGGAAGC CGACAAGACC GAGATGCTGG TGGAAACGGC GGCGATGCTG
ACCGAACTGG GCCTCGACAT CGTCGCGACC AGAGGGACCG CGGCCTTCCT GAAGGATCAC
GGCATCGCCT CCAAGGTCGT CAACAAGGTC TACGAGGGCC GCCCGGACGT GGTCGACATG
CTCAAGGACG GGCGCATCGC GCTGGTGATG AACACCACCG AGGGCGCGCA GGCGGTCAAT
GACAGCCGCG AAATCCGGTC CGTCGCGCTC TATGACCGCA TCCCCTACTT CACCACGCTG
GCGGCCAGCC ATGCCGCGGC CCAGGCCATG ATCGCCCGCC GCGAGGGCGA GATCGGCGTC
CGCGCGTTGC AGGGATGA
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| Protein sequence | MPKRTDIKSI MIIGAGPIII GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPGL
ADATYIEPIT PEIVAKIIEK ERPDALLPTM GGQTGLNTSL ALEEMGVLAK YGVEMIGAKR
EAIEMAEDRK LFREAMDRLG IENPRATIAT TMDECMAALD DIGLPAIIRP AFTLGGTGGG
VAYNRDDYEH FCKSGLDASP VNQILIDESL LGWKEFEMEV VRDKADNAII VCAIENVDPM
GVHTGDSITV APALTLTDKE YQIMRNGSIA VLREIGVETG GSNVQWAVNP ADGRMVVIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDELDNDIT KVTPASFEPT IDYVVTKIPR
FAFEKFPGAE PNLTTAMKSV GEAMSIGRTF HESVQKALAS METGLTGFDE IAIPGISADH
RSDAPDTAAV VKALARQTPD RLRVIAQAMR HGLSDDEIQA ATSYDPWFLA RIREIVETEA
QVRRDGLPLE AEGLRKLKMM GFTDARLAKL TGRDEGQVRR ARTRLGVTAQ FKRIDTCAAE
FEAQTPYMYS TYETPVMGEA ECESRPTDAT KVVILGGGPN RIGQGIEFDY CCCHACFALT
EAGYETIMVN CNPETVSTDY DTSDRLYFEP LTFEHVMEIL RAEQENGTLH GVIVQFGGQT
PLKLANALEA EGIPILGTTP DAIDLAEDRE RFQALVNDLG LKQPHNAIAS TDAEAFAAAG
DIGFPLVIRP SYVLGGRAME IVRDMGQLER YIAEAVVVSG DSPVLLDSYL AGAVELDVDA
LCDGENVHVA GIMQHIEEAG VHSGDSACSL PPYSLSDDVL ARIRVQTEAL ARALRVKGLM
NVQFAIKDDE IYLIEVNPRA SRTVPFVAKA TDSAIASIAA RLMAGEPLSN FPLRDPLPHD
APEDQHLPIG DPMTLAHPDT PWFSVKEAVL PFARFPGVDT ILGPEMRSTG EVMGWDRSFP
RAFLKAQMGA GTVLPTEGTV FLSIKEADKT EMLVETAAML TELGLDIVAT RGTAAFLKDH
GIASKVVNKV YEGRPDVVDM LKDGRIALVM NTTEGAQAVN DSREIRSVAL YDRIPYFTTL
AASHAAAQAM IARREGEIGV RALQG
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