| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2589 |
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| Symbol | |
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| ID | 5713487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2754445 |
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| End bp | 2756049 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641268513 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001533923 |
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| Protein GI | 159045129 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00328254 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAGGACT TCGCCGCGCT CTTCACCTCC CTCGACCAGA CCACGAAGAT CACGCCCAAG
GTCGCCGCCC TCGCCGCCTA TTTCCGCACC GCCCCCGAGG AGGACCGCCT CTGGACCATC
GCGCTCCTGT CCGGCCGCCG CCCCAAGCGC ACCGTGACCA CCACCCGCCT GCGCGAATGG
GCGGCCGAGC GCGCGGGCAT CCCCCTGTGG CTCTTCGAAG AGGCCTACCC GGTCGTCGGC
GATCTGGCCG AAACCATCGC CCTCGTCCTG CCGCCCCCCA CCCGCACCAG CACCCGCTCG
CTCACCGACT GGATCACCAC CATCCGCGGC CTCGCCGCCC GCGACGAACC CGACCGCCGC
GCCGAAATCC TCGCGGCCTG GGACAGCCTG CCCGAGACCG AACGCTTCGT GTTCAACAAG
CTCATCACCG GCGGCTTCCG CATGGGCGTG TCGGCCAAGC TGATGACGCG CGCCCTGTCG
CAGGCCACCG ACATTCCCGA ACCCGAACTG GCCCACCGCC TCATGGGCGA CTGGACGCCG
GAGACCACCA GCTTCCAATC CCTCGTGCTC ACCCGCGACC CGGCGGCGGA CCTGTCCAAA
CCCTATCCGT TCTACCTCGC CTACGGGCTG GAGGATCCGC CCGACACCCT CGGCCCCCCC
GCCGACTGGC AGGCGGAGCA CAAATGGGAC GGCATCCGCG GCCAGCTCAT CCTGCGCGGC
GGCCAGCACT TCGTCTGGTC CCGGGGCGAA GAGCTGATGA CCGACCGCTT CCCCGAGCTT
GCCGCCCTGC GCGACTTCCT CCCCGACGGC ACCGTGCTCG ACGGCGAACT GCTCGCCTGG
GATTACAACG GCGCGGGCGA CGCCCCCCTG CCATTCAACG CCCTGCAAAA ACGCATCGGC
CGCAAGACCG TGCCCAAAAA ACTCCTGTCC GAGGCCCCGG TGATCCTGCG CGCCTACGAC
CTGCTGGAGG ACGGCGGCAC CGACCTGCGC GACCGCCCCC TGTCGGAGCG CCGCGCGCGG
CTGGAGGCCC TGGCCGCCGC CCTGCCCGAC ACGCTGCCCC TGCGGCTCTC CCCGACCCTG
ACCTTCGACA GCTGGGACGC GCTGGCCCAA ATCCGCGCAA AATCGCGCGA GATGGGCGCC
GAAGGGATCA TGCTCAAACG CCGCGCCTCC CCCTACCTCG CGGGCCGCAA GAAGGGCGAC
TGGTGGAAAT GGAAGGTCGA TCCCCTGACC ATCGACGCGG TGATGATCTA CGCCCAGGCG
GGCCACGGAC GCCGCGCGAA CCTTTTCACC GACTACACTT TCGCGGTCTG GGACGGAAAC
GAGCTTGTCC CCTTCACCAA GGCCTATTCG GGCCTCACCG ACGCCGAGTT CCGCCAGATC
ACCGCCTGGG TCCGCAAGAA CACCCTGGAA CGCTTCGGCC CCGTGCGCCG CGTAACCCCC
GAACACGTCT TCGAGATCGC CTTCGAGGGG ATACAAGCCA GCCCCCGCCA CAAATCCGGC
GTCGCCCTGC GGTTCCCGAG GATGCTGCGC TGGCGCAAGG ACAAACCGCT GCAAGAGGCG
AACACGCTGG AGGATTTGAA AGGGATGTTG GAGGTGTATG GGTAG
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| Protein sequence | MKDFAALFTS LDQTTKITPK VAALAAYFRT APEEDRLWTI ALLSGRRPKR TVTTTRLREW
AAERAGIPLW LFEEAYPVVG DLAETIALVL PPPTRTSTRS LTDWITTIRG LAARDEPDRR
AEILAAWDSL PETERFVFNK LITGGFRMGV SAKLMTRALS QATDIPEPEL AHRLMGDWTP
ETTSFQSLVL TRDPAADLSK PYPFYLAYGL EDPPDTLGPP ADWQAEHKWD GIRGQLILRG
GQHFVWSRGE ELMTDRFPEL AALRDFLPDG TVLDGELLAW DYNGAGDAPL PFNALQKRIG
RKTVPKKLLS EAPVILRAYD LLEDGGTDLR DRPLSERRAR LEALAAALPD TLPLRLSPTL
TFDSWDALAQ IRAKSREMGA EGIMLKRRAS PYLAGRKKGD WWKWKVDPLT IDAVMIYAQA
GHGRRANLFT DYTFAVWDGN ELVPFTKAYS GLTDAEFRQI TAWVRKNTLE RFGPVRRVTP
EHVFEIAFEG IQASPRHKSG VALRFPRMLR WRKDKPLQEA NTLEDLKGML EVYG
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