| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2580 |
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| Symbol | hrpB |
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| ID | 5713478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2745303 |
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| End bp | 2747807 |
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| Gene Length | 2505 bp |
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| Protein Length | 834 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641268504 |
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| Product | ATP-dependent RNA helicase |
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| Protein accession | YP_001533914 |
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| Protein GI | 159045120 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.262395 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0000513711 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTGCGCC CCTGGCGGGA GTACGTTCGG AACAATGAGG CGGTTGGTGT GACCTCTGGG
GGCGGCAAGA GCGCGTCCTT GCCCATCGAC GGGGCGCTGC CGGAGCTGTT GGCGGCCATG
GCCGGGTCCG GCATGGCCGT GCTGCAGGCC CCGCCCGGGG CGGGCAAGAC CACGCGCGTC
CCATTGGCCC TGCTGGAGGC CGGGGCCGCG GGCCGGATCG TGATGCTGGA GCCGCGGCGG
CTGGCTGCGC GGGCGGCGGC GGAGCGGATG GCCGCGAGTT TGGGCGAGCC CGTGGGCGCC
ACCGTGGGCT ACCGGATGCG GGGGGCCAGC AAGGTCGGGC CCGCGACCCG GATCGAGGTG
GTGACCGAGG GCATTCTGAC CCGCTGGCTG ATGGCGGATC CGGAGTTGCC GGGGATCGGC
ACGGTGATTT TCGACGAATT CCACGAACGC TCTCTCAACG CGGATTTGGG GTTGGCCTTG
TGCCTGGAGG TGCGCGGCGC GCTGCGCGAG GATCTGAACC TGCTGGTGAT GTCGGCGACG
CTCGATGCGG AGCCGGTGGC TGCCCTGATG GGGGGGGCGC CCGTGGTGAC CAGCGCGGGC
CGCGCGTTTC CCGTGGAGGC GCGGTACCTA GAGCGCCCCT TGCCGCGCGG GGCGCGGTTT
GCCCCGGCGG TCGCGGACCT GGTGCTTCAG GCCTTGGAGG AGGCCGAGGG CAGTGCGCTG
GTATTTCTGC CCGGCGAGGG GGAGATCCGG CAGGTTGCGG CGCTGTTGCG GGACCGTGTG
GGACGAGATG TGGTGGTGCG GCCCCTGTTC GGGGCGATGA AGCTGTCCGA GCAGCGCGCC
GCGATCGCGC CCGCGCCCGA GGGCCAGCGC AAGGTGGTGC TGGCCACGGC GATTGCCGAG
ACCTCCCTGA CCATCGAGGA TGTGCGGATC GTCGTGGATG GCGGCCGCGC GCGGCGGGCG
CGGTTCGATC CGGGCTCGGG CATGTCGCGG CTGGTCACCG AGCCTGTGAG CCGGGCCGAG
GCGGCCCAGC GGCAGGGCCG GGCGGGACGG GTGGCGCCCG GGGTCTGCTA CAAGCTCTGG
ACGCGGGGCG CGGAGGGGGC GTTTGCGGCC TATGCGCCGC CGGAGATCGC GGTGGCGGAC
CTGAGTGGGC TGGCGCTCGA TCTGGCGGTC TGGGGGACCG GGCCGGAGGA TCTGGCCCTG
CTGACGCCAC CGCCGGAGGG GGCCTGGGCC GAGGCGCGGG CCTTGTGCGC CATGTTGGGC
GCGCTGGATG CCGAGGGGCG GGTGACGGAC CACGGCCGGG CGCTGGCGCG GATGCCGACC
CACCCGCGGT TGGCCCACAT GCTCCATGTC GCGGGGCGGC AGGGGACGGA GTTGGCAGCG
CTCCTGTCTG AGCGGGATCT GGATCGGGGG GCGGGGGTGG ACCTGGCGCG CCGGGTGGCG
ATCCTGCGGG GCGATGCGCC GGCCCCGGAT CCGGGCGCGC GGGCGCGGGT GCGCGAGGAG
GCGAAGCGTC TGGCGCGCGA CCTGCCGGAG CGGGCGGCAC TGAGCCTCGG GGCGCAGGCG
GCGCTGGCCT ATCCGGACCG GATCGGGTTG CGCCGGGCGG GGGAGGCGCC GCGCTACTTG
CTGGCGGGGG GCAAGGGGGC GGTGATGGAG CCGGACGCCC CGCTGGCGGG GATGCGGTTG
ATCGTGGCGA CGGATCTGGA CGGCGACCCG CGGGAGGCGC GCATCCGGCA GGCGGTGGCG
GTGACCGAAG GGGAGGTGCG GGCGCTGTTT GCGGATCGGA TCCTCTGGCG CGACCTGTGC
GCCTGGTCGA AGCGGTTCCG AAAGGTGGTG GCGCGGCAGC AGGAGTGCCT GGGCGCGCTC
GTGCTGGCCG ACAGGGTCTG GCGCGATGTG CCGGAGGCGG CGCGGGCGGC GGCGGCGCTG
GAGGGGGTGC GGGATCTGGG TCTCGCGGCT CTGGGCGGTG GGCCTGCGTT CGAGCGGTTG
AGGGCGCGTG TGGCGCTGTG CCGGGCCGGG GGGCTGGAGG TGCCGGACAT GTCCGAGGCC
GCGTTGCTGG AGGCCGGGGA GGCGTGGTTG CTGCCGGTGC TTGGGCAGGT GCGGGATGCG
GACGATCTGC GCCGGATCGA TCCGTTGGAG CCGCTGCGCG CCTGGTTGGG CTGGGACGCG
TTGCAGGCGG TGGAGGCGCA GGCGCCCGGC GCGATCACGA CGCCCTTGGG GCGCAAGCTG
CCGGTGGATT ACAGCGGCGA GGTGCCCGAG GTGCAGGCGC GGGTGCAGGA GTTCTACGGG
GTCACACGGC ATCCGACCGT GGGGCCGGGG CGGGTGCCGC TGCGTCTGAC GCTGTTGTCG
CCGGGGCAGA AGCCCGTGGC GGTGACCTCG GACCTGCCGG GGTTCTGGGT GGGGGGCTAT
GCGGACCTGC GCAAGGATAT GCGGGGGCGG TATCCGCGCC ATCCCTGGCC GGAGGATCCG
ACGGAGGCTG CGCCCACGAC CCGGGCCAAG CCGCGCAAGG GGTAG
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| Protein sequence | MLRPWREYVR NNEAVGVTSG GGKSASLPID GALPELLAAM AGSGMAVLQA PPGAGKTTRV
PLALLEAGAA GRIVMLEPRR LAARAAAERM AASLGEPVGA TVGYRMRGAS KVGPATRIEV
VTEGILTRWL MADPELPGIG TVIFDEFHER SLNADLGLAL CLEVRGALRE DLNLLVMSAT
LDAEPVAALM GGAPVVTSAG RAFPVEARYL ERPLPRGARF APAVADLVLQ ALEEAEGSAL
VFLPGEGEIR QVAALLRDRV GRDVVVRPLF GAMKLSEQRA AIAPAPEGQR KVVLATAIAE
TSLTIEDVRI VVDGGRARRA RFDPGSGMSR LVTEPVSRAE AAQRQGRAGR VAPGVCYKLW
TRGAEGAFAA YAPPEIAVAD LSGLALDLAV WGTGPEDLAL LTPPPEGAWA EARALCAMLG
ALDAEGRVTD HGRALARMPT HPRLAHMLHV AGRQGTELAA LLSERDLDRG AGVDLARRVA
ILRGDAPAPD PGARARVREE AKRLARDLPE RAALSLGAQA ALAYPDRIGL RRAGEAPRYL
LAGGKGAVME PDAPLAGMRL IVATDLDGDP REARIRQAVA VTEGEVRALF ADRILWRDLC
AWSKRFRKVV ARQQECLGAL VLADRVWRDV PEAARAAAAL EGVRDLGLAA LGGGPAFERL
RARVALCRAG GLEVPDMSEA ALLEAGEAWL LPVLGQVRDA DDLRRIDPLE PLRAWLGWDA
LQAVEAQAPG AITTPLGRKL PVDYSGEVPE VQARVQEFYG VTRHPTVGPG RVPLRLTLLS
PGQKPVAVTS DLPGFWVGGY ADLRKDMRGR YPRHPWPEDP TEAAPTTRAK PRKG
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