| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2451 |
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| Symbol | murD |
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| ID | 5714107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2594434 |
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| End bp | 2595828 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641268374 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_001533786 |
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| Protein GI | 159044992 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCCCG TGCGCGGATT TTCCGGCGAA ACCATCGCTG TGCTCGGACT GGGCCGCTCC
GGCCTCGCCA CGGCCCGCGC CCTGCGCGCC GGCGGTGCCA CGCCGCTGTG CTGGGACGAC
AATACCGAGG CCCGCGCCCG GGCCGAGGCC GAGGGCTTCG CCTGCGCGCC CCTCAAACAC
GCCGACGCCT TCGACGGGGT CGCGGCCCTG ATCACCTCGC CGGGCATCCC CCATCTCTAC
CCGACCCCGA ATCCCACGAT CGCGCTGGCC ATGTCCCTCG GCATCCCCGT GGACAACGAT
ATCGGCCTGT TCTTCCGCTC CTTCGCCACG CCGGACTGGG ACGAGTTCGA CAGCCTCCCG
CGGGTCATCG CGGTCACCGG CTCCAACGGC AAATCCACCA CCTCCGCGCT GATCCACCAC
GTCCTGACGG CGGCGGGCCG GCCCACCCAG CTGGCCGGCA ATATCGGCCG CGGCGTGCTC
GACATCGACC CGGGCGAGGA TGGCGGCATC GTCGTCTTGG AGCTGTCGAG CTACCAGACC
GAGCTTGCCC GCGCCCTGAC CCCCGACATC GCGGTCTTCA CCAATCTCAG CCCCGACCAC
CTGGACCGTC ACGGTGGCAT GGGTGGGTAT TTCGCGGCCA AGCGGCGGCT CTTCACCATC
GGCGGGCCGG ACCGTGCGGT GATCGGCACC GACGAGCCCG AGGGCCTGTT CCTCGCCTCC
CAGCTCTCCG TGGCGCCCGC CGATGACCGG GTGATCCGGG TGACCTCCGC CAAACCCTCG
GGGCCCGGCT GGGTCGTTAG CGCGCGCAAG GGGTTCCTGG CCGAGCACCG CAAGGGCCGC
CAGACCGGGT CCATCGACCT GCGCCCGATC CCGGGCCTGC CCGGGGCCCA TAACCACCAG
AACGCCGCCT GCGCCTATGC CGCCTGCCGC AGCCTCGGCC TTGCCCCGCG CCAGATCGAG
GCGGGCTTTG CCAGTTTCAA GGGGCTGCCG CACCGCAGCC AGATCGTCGG CACCGCGAAC
GGCGTCACCT TCGTCAACGA CAGCAAGGCC ACCAACGTGG ACAGCGCGGC CAAGGCGCTA
CAGGCTTTCG ACCGCATCCG CTGGATCGCC GGCGGACTGG AGAAGGAGGG CGGTCTCGCG
GCCCTCACCC CCCATCTGGG CGGGGTCCGC AAGGCCTACC TGATCGGGCG CTCGGCGGCC
GAGTTCGCCC TGGGCATTCC CGACACTCCC CACGAGGTCT GCGAGACCAT GGCCCGCGCC
GTGGCCGCAG CCGTGGCCGA AGCCGAACCG GGCGATACGA TCCTGCTTGC CCCTGCCGCG
GCCAGCTTCG ATCAGTACGA CAATTTCGAG CGACGCGGCG AGGACTTCAT CGCCGAGGTG
GCGAAGTACT TATGA
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| Protein sequence | MIPVRGFSGE TIAVLGLGRS GLATARALRA GGATPLCWDD NTEARARAEA EGFACAPLKH
ADAFDGVAAL ITSPGIPHLY PTPNPTIALA MSLGIPVDND IGLFFRSFAT PDWDEFDSLP
RVIAVTGSNG KSTTSALIHH VLTAAGRPTQ LAGNIGRGVL DIDPGEDGGI VVLELSSYQT
ELARALTPDI AVFTNLSPDH LDRHGGMGGY FAAKRRLFTI GGPDRAVIGT DEPEGLFLAS
QLSVAPADDR VIRVTSAKPS GPGWVVSARK GFLAEHRKGR QTGSIDLRPI PGLPGAHNHQ
NAACAYAACR SLGLAPRQIE AGFASFKGLP HRSQIVGTAN GVTFVNDSKA TNVDSAAKAL
QAFDRIRWIA GGLEKEGGLA ALTPHLGGVR KAYLIGRSAA EFALGIPDTP HEVCETMARA
VAAAVAEAEP GDTILLAPAA ASFDQYDNFE RRGEDFIAEV AKYL
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