Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2434 |
Symbol | |
ID | 5714090 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 2575507 |
End bp | 2576508 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641268357 |
Product | putative periplasmic binding abc transporter protein |
Protein accession | YP_001533769 |
Protein GI | 159044975 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | [TIGR02637] rhamnose ABC transporter, rhamnose-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGTC GCACCTTCAC CAAACTCACC GCAGGGCTCA GCCTTGCCGC CAGCCTGTTC GGCACAACCG CCATGGCCCA GGACGAGATG CGCATCGCCC TCGTCGTGAA GGCCCTCGGC ATCGGCTTCT TCGAGGCCGC CGCCCAGGGC GCCGAGGAAG CCGCCGCGGA ACTCGGGGGC GTCGAGATCA TCTATACCGG TCCCACCGAC ACCACGGCCG AGGGCCAGAT CGAGGTAATC AATTCGCTGA TCGCCCAGGG CGTTGATGCC ATCGCGGTGT CGGCCAATGA CACCGATGCG CTGGTCCCGA CGCTCAAGAA GGCGATGCAG CGGGGCATCA CGGTGATATC CTGGGATTCC GGCGTGGCCC CCGAAGGGCG CCAGATGCAC CTGAACCCCT CCTCCAACGC CCTGATCGGG AACATGATCA TCAAGCTTGC CGCCGATCAT TTGCCCGATG GCGGGGATGT CGCGGTTCTG TCCGCGACCA CCACCTCGAC CAACCAGAAC ATCTGGATCG AAGAGATGAC CAAGGTGCTG GGCGACTATC CGGGCATCAA CGTGGTCTCC ACCGTCTATG GCGATGACCT GGCCGACAAG TCCTACCGCG AAGCGCAGGG CCTGATGCAG TCCTTCCCGG ACCTCGATGC GATCATCGCG CCCACCTCCG TCGGGATCGT CGCCGCGGCA CAAGCGGTCG CGGATGCGGG CAAGATCGGC CAGGTCAACG TGACCGGCCT TGGCCTGCCC TCCGAGATGG CCGGTGCCAT CGAAAGCGGC GCATCCAAGT CCTTCGCGAT CTGGAACCCG ATCGATCTGG GCTACTCGGC CGCGATGATC GCCCATGCGC TCGCCTCCGG CGCGGCCACG GCGGAGCCGG GGACAGAGAT CTCCATCGGG CGCGTCGGGA CCATCACCCT GGACGAGAAC AACGAGGCCG CCATGGCCGA TCCGTTCATC TACGACGCCT CCAACATCGA TCAGTTCAAG TCGATCTTCT AG
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Protein sequence | MKRRTFTKLT AGLSLAASLF GTTAMAQDEM RIALVVKALG IGFFEAAAQG AEEAAAELGG VEIIYTGPTD TTAEGQIEVI NSLIAQGVDA IAVSANDTDA LVPTLKKAMQ RGITVISWDS GVAPEGRQMH LNPSSNALIG NMIIKLAADH LPDGGDVAVL SATTTSTNQN IWIEEMTKVL GDYPGINVVS TVYGDDLADK SYREAQGLMQ SFPDLDAIIA PTSVGIVAAA QAVADAGKIG QVNVTGLGLP SEMAGAIESG ASKSFAIWNP IDLGYSAAMI AHALASGAAT AEPGTEISIG RVGTITLDEN NEAAMADPFI YDASNIDQFK SIF
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