Gene Dshi_2412 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_2412 
Symbol 
ID5714068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2549412 
End bp2551100 
Gene Length1689 bp 
Protein Length562 aa 
Translation table11 
GC content69% 
IMG OID641268335 
Productputative chloride channel protein 
Protein accessionYP_001533747 
Protein GI159044953 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0038] Chloride channel protein EriC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.03983 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAACC CGCCCCAAGG CTTCTTTGCT CAGCAGCTGG GTGCATGGCG CAGCGCGCTT 
GCGCGCGCCT CCGTCACGAT CCGCCGCCAG GGCCCCAGCC AGATCCAGTT CTGGTTCATC
GCGCTGGCCG TGGGCATCGC GGCGGGCTTT GCGGCGCTGA TCTTCCGCAA GGGGATTCAC
TGGCTCCAGA CAATGGCCTA CGGCCACGAG GATGTGCGCG CGGTGATCGA CCACGCGGCG
GGCCTGCCCT GGTACTGGCT GGTGATCGTG CCGACGCTGG GCGGGCTGGT GGTGGGGCTG
ATCCTGCATT TTTTCACCGA TGACGGGCGG GTGCGGTCGG TCGCGGATGT GATCGAGGGC
TCCGCGCTCT ACGAGGGCCG GGTCGAGAAG CGCGCGGGCA TCGCCTCGGC GGTCGCCTCC
TGGATCACCC TGTCCACCGG CGGGTCGTCC GGGCGCGAGG GGCCGGTGGT CCACCTGGCC
GCCGTGATCT CCAGCTGGGT GAGCAACCGC ATCCATGCCG ACGGGATCAC CGGGCGCGAC
CTGCTCGGCT GTGCGGTTGC CGCCGCCGTG TCGGCCTCGT TCAACGCCCC CATCGCCGGG
GCGCTCTTCG CGCTGGAGGT GGTGCTGCGC CATTTCGCGG TCCACGCCTT CGCGCCCATC
GTCATCGCCT CGGCCGCCGG GACGGTGATC AACCGGCTGG AATTCGGCGA CGTGACCGAG
TTTTCTCTGC CCGAGGCCAA CGCGCTGGCG TTCTATGTCG AACTGCCGGC CTTCCTGCTG
CTGGGGCTCG TCTGCGGCCT GGTCGCCATC GTCTTGATGA AATCGGTGTT CTGGACCGAG
GATTTCGCCA ACCACCTGCA GAAGGTCACC GGCCTTCCGC GCTACCTGCG CCCGGCTTTC
GCGGGGGTGC TGCTGGGGCT GCTGGCGATC TGGTTCCCGC ATATCATCGG GGTCGGCTAC
GAGACCACGA CCAACGCCCT GACCTCGCAA CTGCTGCTGC ACGAGGCGAT CGTGTTCGCC
ATCCTCAAGG TGGTCGCGGT GGCGATCACC ATCGGCGGGC GCATGGGGGG CGGCATCTTC
TCGCCCTCGC TCATGGTCGG CGCGCTGACG GGGCTGGCCT TCGGGATGAT CGCCACGGGC
GTCTTCCCCG ATGTGTCAGG CTCCGAAGCG CTCTACGCGC TGGCGGGGAT GGGGGCGGTG
GCCGCCGCGG TGCTGGGCGC GCCGATCTCG ACGACCCTGA TCGTGTTCGA GCTGACCGGC
GACTGGCAGA CCGGGCTGGC GGTGATGGTG GCGGTGTCGC TCTCCACCGC GCTGGCGAGC
CGGGTGGTGG ACCGGTCGTT CTTCCTGACA CAGCTGGAGC GGCGCAATGT CCATCTCGCC
GCGGGGCCGC AAGCCTATCT GCTCGGTACC GTGCGGGTGG CCAAGATCAT GCGGCCCACC
AGCCACCCCC GGGCCGCGCC CGAGGCGCGA TGTTGGGACC TGATCGGGGA CGGGGTCTAT
CTGGACGGCA CCGCCAGTCT CGAGACGGCC ATGCCCGCCT TCGAGCGGGC CAATCATGAT
TTCATCCCCG TGGTCAGCCT GGGCGGCGAG GGGGAGCCGC CCGAGCTGTG GGGCGCGCTC
TTTCAGGTCG ATGCGCTGAA GGCGCTGAAC CGGGCGCTGG CCGAAACCGC CGCCGAGGAG
CATTCCTGA
 
Protein sequence
MSNPPQGFFA QQLGAWRSAL ARASVTIRRQ GPSQIQFWFI ALAVGIAAGF AALIFRKGIH 
WLQTMAYGHE DVRAVIDHAA GLPWYWLVIV PTLGGLVVGL ILHFFTDDGR VRSVADVIEG
SALYEGRVEK RAGIASAVAS WITLSTGGSS GREGPVVHLA AVISSWVSNR IHADGITGRD
LLGCAVAAAV SASFNAPIAG ALFALEVVLR HFAVHAFAPI VIASAAGTVI NRLEFGDVTE
FSLPEANALA FYVELPAFLL LGLVCGLVAI VLMKSVFWTE DFANHLQKVT GLPRYLRPAF
AGVLLGLLAI WFPHIIGVGY ETTTNALTSQ LLLHEAIVFA ILKVVAVAIT IGGRMGGGIF
SPSLMVGALT GLAFGMIATG VFPDVSGSEA LYALAGMGAV AAAVLGAPIS TTLIVFELTG
DWQTGLAVMV AVSLSTALAS RVVDRSFFLT QLERRNVHLA AGPQAYLLGT VRVAKIMRPT
SHPRAAPEAR CWDLIGDGVY LDGTASLETA MPAFERANHD FIPVVSLGGE GEPPELWGAL
FQVDALKALN RALAETAAEE HS