Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2346 |
Symbol | tgt |
ID | 5714001 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 2479455 |
End bp | 2480585 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641268270 |
Product | queuine tRNA-ribosyltransferase |
Protein accession | YP_001533683 |
Protein GI | 159044889 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming [TIGR00449] tRNA-guanine transglycosylases, various specificities |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.395355 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.213508 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACAGA GATTTTCCTT CACGCGCCTC GGACAGGACG GGGCGGCGCG GCTTGGCCGT ATCAACACGC CCCGCGGAGA GATCCGGACG CCGGCCTTCA TGCCGGTGGG CACGGCGGCC ACGGTCAAGG CCATGCGCCC CGAAAGCGTG CGCGAGACCG GGGCGGATAT CCTGCTGGGC AATACCTACC ACCTGATGCT GCGCCCCACG GCGGAGCGGA TCGCGCGCCT CGGCGGGTTA CACAGGTTCA TGAACTGGGA CCGGCCGATC CTGACCGATT CCGGCGGGTT CCAGGTGATG AGCCTGACCG GGTTGCGCAA GCTCACCGAG CAGGGCGTGA CTTTCAAGAG CCATATCGAT GGCTCGAAAC ACATGCTCAG TCCCGAGCGG TCGATGGAGA TCCAGAAACT GCTCCGATCG GATATCGTCA TGTGCTTCGA CGAGTGCCCG GCCTTGCCCG CGCCGCGGGA GCGGATCACC GAGAGCATGG AGTTGTCCAT GCGCTGGGCC GCGCGGTCGC GCGAGGCGTT CGGGGACTGG CCGGGGCATG CGCTCTTCGG GATCCAGCAG GGCGGGCTGG AGGAGGATCT GCGCGGCAAG AGCGCCGAGG CGCTGCGGGC CATCGAGTTC GACGGCTACG CAGTCGGCGG GCTCGCGGTG GGCGAGGGGC AGGAGGCGAT GTTCGGCGTG CTGGATTACG CCCCCGGAAT GCTGCCCGAG GACAAGCCGC GTTACCTGAT GGGGGTCGGC AAGCCCGGCG ACCTGGTGGG CGCGGTCAAG CGGGGCATCG ACATGTTCGA CTGCGTGCTG CCGTCGCGGT CGGGCCGCAC GGGGCAGGTC TTCACCCGGC GCGGGGTGGT CAACATCAAG AACGCGCGCC ATGCGGATGA TCCGCGTCCG CTGGACGAGG ATTGCACCTG CCCGGCCTGC CGCAGTTACA GTCGGGCCTA TCTGCACCAT GTGTTCCGGG CCGGTGAAAT TCTGTCCTCG ATGCTGCTGA CCTGGCACAA CCTGCATTAC TACCAGGAGT TGATGCAGGG GATGCGCGAT GCGATCGGTG CCGGGGATTT CGCAGGGTTC GAGGCGCGGT TTCTGGCGCA GCAGGCCGAG GGCGATATCG CGCCGGTCTG A
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Protein sequence | MTQRFSFTRL GQDGAARLGR INTPRGEIRT PAFMPVGTAA TVKAMRPESV RETGADILLG NTYHLMLRPT AERIARLGGL HRFMNWDRPI LTDSGGFQVM SLTGLRKLTE QGVTFKSHID GSKHMLSPER SMEIQKLLRS DIVMCFDECP ALPAPRERIT ESMELSMRWA ARSREAFGDW PGHALFGIQQ GGLEEDLRGK SAEALRAIEF DGYAVGGLAV GEGQEAMFGV LDYAPGMLPE DKPRYLMGVG KPGDLVGAVK RGIDMFDCVL PSRSGRTGQV FTRRGVVNIK NARHADDPRP LDEDCTCPAC RSYSRAYLHH VFRAGEILSS MLLTWHNLHY YQELMQGMRD AIGAGDFAGF EARFLAQQAE GDIAPV
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