Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2340 |
Symbol | |
ID | 5713995 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 2468813 |
End bp | 2471893 |
Gene Length | 3081 bp |
Protein Length | 1026 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641268264 |
Product | ribonuclease |
Protein accession | YP_001533677 |
Protein GI | 159044883 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.114926 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.216071 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAGA AGATGCTCAT CGATGCCACC CACGCGGAAG AGACCCGCGT TGTGGTGGTC GACGGAACGA AGGTCGAGGA ATTCGACTTT GAGTCGGTAA ACAAGCGGCA ACTTGCGGGA AATATCTATC TGGCGAAAGT GACACGGGTC GAGCCGTCCC TGCAGGCGGC CTTCGTGGAC TATGGTGGCA ATCGCCACGG GTTCCTCGCC TTCTCGGAAA TTCACCCGGA CTACTATCAG ATCCCGGTGG CGGATCGCGA GGCGTTGCTG GCCGAGGAAA TGGCCTTTGC AACCGCCGAT GCGGAAGAGG ACGAGGTCAA GCCGAAGAAG CGCCGTTCCC GTCGCCGGAA GAAGGTCGAG ACGTCGGACG AGGACGCGGC CGAGGTCACT GCCGACAGCA ATGCCGCCGA GGCCGAGACG GCACAGGACG CGGACGCTGC CGACAGCCCG GATGCAAAAG ACGCCCCGGC AGTCGAGGCG GCGCAGGCTG CGCCGGAAGA TGTCGCAGAG GACGCGCCGA CAACCGAGAC CGAAGCGCAG ACAGCCGAGG CCGAACCGGC CGAGACCGCC GAGGCGGACG AAGATACCGC CAAGCCCCCC ATGCCGCACG CGGTAGAGGG CGATGACCCG ACCGTGAAAT CCGAAGAGGT GAGCGAGGCC GACGCGGACC CGCAAGCCGA GCCCGGATCC CCGGCAGCGG AGGAGGCCCC TGCCGAGGAC GCCCCTGCCG AGGACAAGCC GGTCGCCGAA GCCGCGCCGC GCCAGACACA GTCCATCCCC GGCATGGACG TGGTCGAGAC CGACAGCGAG GCCGAGGACG GTCCGATCCT CGTGGCCGAA GCCGCGGGCG CCGGCCCGGA TGGCGATAAG GAAACCGCCG AGAAGCCCAA GCGCCGTCGC AGCCGACGCC GCAAGAAAAC CGATGTCGAG GTGTCCGAGG AGGCCACGGA CGAGACCGCG GCGGCCGACA GCGACGCCGC AGACCAGGAT GACGGTATCG AGGATGTGGC CGACGAGGAT GTGGCCGAAG AGATCCGCCG CCCCCGCCAG CGCCGGGAGC GCCGCTACAA GATCCAGGAA GTCATCAAGG TCCGTCAGGT CCTGCTGGTT CAGGTCGTCA AGGAAGAGCG TGGCAACAAG GGCGCGGCCC TGACCACCTA TCTCAGCCTC GCGGGCCGCT ACTGCGTGTT GATGCCCAAC ACCGCCCGCG GCGGCGGCAT CAGCCGCAAG ATCACCAATG CAGTGGACCG CAAGAAACTC AAGGAGATCG CCTCCGAGAT CGAGGTGCCG CGCGGCGCGG GCCTGATCGT GCGCACGGCG GGGGCCAAGC GGACCAAGAC CGAAATCAAG CGGGACTACG ACTACCTCAA GCGGCTATGG GAGCAGATCC GCGACTTGAC CCTGAAATCC ATCGCGCCCG CCCCGATCTA TGAGGAAGGC AACCTCATCA AGCGCTCGAT CCGCGATCTT TACAGCCGCG ATATCGACGA GGTGCTGGTC GAGGGGGAAG AAGGCTACCG GGTGGCCAAG GACTTCATGA AGATGCTCAT GCCGTCCCAC GCCAAGAACG TGAAGCTCTA CAATGAGAAC CTGCCGCTCT TTGCGCGGTA TCAGGTGGAA AGCTACCTCG CGGGCATGTT CAACCCCACG GTGCAGCTGA AATCCGGGGG CTACCTCGTG ATCGGCGTGA CCGAGGCGCT GGTGGCGATC GACGTGAACT CGGGCCGGGC CACCAAGGAA GGCTCGATCG AGGAGACCGC GCTCAAGACA AACCTGGAGG CCGCCGAGGA AGTGGCCCGC CAGGTCCGCC TGCGCGACCT CGCCGGTCTG ATCGTGATCG ACTTCATCGA CATGGAAGAG CGGCGCAACA ATACCGCTGT CGAGAAGCGT CTGAAGGACA AGCTGAAGAC CGACCGCGCG CGCATCCAGG TGGGCCGCAT CTCGGGCTTT GGCCTTCTGG AGATGTCGCG CCAGCGCCTG CGTCCGGGGA TGCTGGAAAT CACCACCCAG CCTTGCAACC ATTGTCATGG CACCGGGCTG ATCCGGTCGG ATAATTCCTT GGCGCTGTCG ATCGTTCGCG CGCTGGAAGA AGAGGGCATG CGCCGCCGCG TGCGCGAGGT TCTCGTCAAG GCGCCGGTCA ATGTCATCAA CTACCTCTTC AACGAAAAGC GCGAGCATAT CGCGCTGATC GAGGGGCGCT ACGGTTTGTC CGTGCGGCTG GAGGCCTCGA ACGAACTTTC GGGGGCGGAC TTCACCATCG ACAAGTTCAA GACCGCGACC CGCAAGGTGG TCGAGCTTGA CGCGCCGGTT GTGTCGATCG ACACCTCGGG CGTGGACGAG GCCGAGATCG TGGAGGAGCC CGACGAGGAA GAGGCCGACA CCGAGACCGA GGCAGAGACT GCCGCCACCG AGGAGACCAG CGAAGAGCAG GCCCCGCGCA AGCGCCGCCG CCGTCGCCGC CGCTCCCGCC GGGGCGGTGG GACCGAGAAC GGCGAGTCCA ACGGAGATGG CAGCGACGAG GCACAATCCG CCGCAGACGC GGACTCCTCG GATCAAGCTG ACATTTCCGA AGAAGCGGAG TCCTCCCAAC CGGCGGTTGA GGCAGAGGCA GAAGAGGCCC CGAAACCCAA GCGTCGTCGG CGTCGTCGCC GGAAGTCCGA CGCAGAAGAG GGTGAAGCTG CTCCCGATGG GGATGCTGTC TCTGAAGACG TCTCTGCGCC TGAACCCGCC CCGACCCCCG AGCCGGTTGC GGAGGCCAAG GCCGACGCGC CTGCGGCGGA AGCCGAGCCT GTAGCGGAGG CCGAAGCGCC GGTTGAACCC GCAGAGTCTG AGGCGCCCGC CCCGGAGGTC GATCCCACGC CGGAGACGGC CGAAACGGCC CCTGTCGAAC ACGGAGACGA GGCATCCGAC ACGACCGATG AGGAGACCGG CCAACCGGTC TCCGAAGAGG CATCGGAAGC GGAGGCCGAA GACCCCCAAG CCGTGGAGCC CGAGCTTGCA GAGGCCGCCA ACGAGGCTGC GCCCGCGCAG GACGACGACA CCAAGCCCAA GCGGCGCGGG TGGTGGTCGC TCGCGCGCTG A
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Protein sequence | MAKKMLIDAT HAEETRVVVV DGTKVEEFDF ESVNKRQLAG NIYLAKVTRV EPSLQAAFVD YGGNRHGFLA FSEIHPDYYQ IPVADREALL AEEMAFATAD AEEDEVKPKK RRSRRRKKVE TSDEDAAEVT ADSNAAEAET AQDADAADSP DAKDAPAVEA AQAAPEDVAE DAPTTETEAQ TAEAEPAETA EADEDTAKPP MPHAVEGDDP TVKSEEVSEA DADPQAEPGS PAAEEAPAED APAEDKPVAE AAPRQTQSIP GMDVVETDSE AEDGPILVAE AAGAGPDGDK ETAEKPKRRR SRRRKKTDVE VSEEATDETA AADSDAADQD DGIEDVADED VAEEIRRPRQ RRERRYKIQE VIKVRQVLLV QVVKEERGNK GAALTTYLSL AGRYCVLMPN TARGGGISRK ITNAVDRKKL KEIASEIEVP RGAGLIVRTA GAKRTKTEIK RDYDYLKRLW EQIRDLTLKS IAPAPIYEEG NLIKRSIRDL YSRDIDEVLV EGEEGYRVAK DFMKMLMPSH AKNVKLYNEN LPLFARYQVE SYLAGMFNPT VQLKSGGYLV IGVTEALVAI DVNSGRATKE GSIEETALKT NLEAAEEVAR QVRLRDLAGL IVIDFIDMEE RRNNTAVEKR LKDKLKTDRA RIQVGRISGF GLLEMSRQRL RPGMLEITTQ PCNHCHGTGL IRSDNSLALS IVRALEEEGM RRRVREVLVK APVNVINYLF NEKREHIALI EGRYGLSVRL EASNELSGAD FTIDKFKTAT RKVVELDAPV VSIDTSGVDE AEIVEEPDEE EADTETEAET AATEETSEEQ APRKRRRRRR RSRRGGGTEN GESNGDGSDE AQSAADADSS DQADISEEAE SSQPAVEAEA EEAPKPKRRR RRRRKSDAEE GEAAPDGDAV SEDVSAPEPA PTPEPVAEAK ADAPAAEAEP VAEAEAPVEP AESEAPAPEV DPTPETAETA PVEHGDEASD TTDEETGQPV SEEASEAEAE DPQAVEPELA EAANEAAPAQ DDDTKPKRRG WWSLAR
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