Gene Dshi_2340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_2340 
Symbol 
ID5713995 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2468813 
End bp2471893 
Gene Length3081 bp 
Protein Length1026 aa 
Translation table11 
GC content66% 
IMG OID641268264 
Productribonuclease 
Protein accessionYP_001533677 
Protein GI159044883 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.114926 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.216071 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAGA AGATGCTCAT CGATGCCACC CACGCGGAAG AGACCCGCGT TGTGGTGGTC 
GACGGAACGA AGGTCGAGGA ATTCGACTTT GAGTCGGTAA ACAAGCGGCA ACTTGCGGGA
AATATCTATC TGGCGAAAGT GACACGGGTC GAGCCGTCCC TGCAGGCGGC CTTCGTGGAC
TATGGTGGCA ATCGCCACGG GTTCCTCGCC TTCTCGGAAA TTCACCCGGA CTACTATCAG
ATCCCGGTGG CGGATCGCGA GGCGTTGCTG GCCGAGGAAA TGGCCTTTGC AACCGCCGAT
GCGGAAGAGG ACGAGGTCAA GCCGAAGAAG CGCCGTTCCC GTCGCCGGAA GAAGGTCGAG
ACGTCGGACG AGGACGCGGC CGAGGTCACT GCCGACAGCA ATGCCGCCGA GGCCGAGACG
GCACAGGACG CGGACGCTGC CGACAGCCCG GATGCAAAAG ACGCCCCGGC AGTCGAGGCG
GCGCAGGCTG CGCCGGAAGA TGTCGCAGAG GACGCGCCGA CAACCGAGAC CGAAGCGCAG
ACAGCCGAGG CCGAACCGGC CGAGACCGCC GAGGCGGACG AAGATACCGC CAAGCCCCCC
ATGCCGCACG CGGTAGAGGG CGATGACCCG ACCGTGAAAT CCGAAGAGGT GAGCGAGGCC
GACGCGGACC CGCAAGCCGA GCCCGGATCC CCGGCAGCGG AGGAGGCCCC TGCCGAGGAC
GCCCCTGCCG AGGACAAGCC GGTCGCCGAA GCCGCGCCGC GCCAGACACA GTCCATCCCC
GGCATGGACG TGGTCGAGAC CGACAGCGAG GCCGAGGACG GTCCGATCCT CGTGGCCGAA
GCCGCGGGCG CCGGCCCGGA TGGCGATAAG GAAACCGCCG AGAAGCCCAA GCGCCGTCGC
AGCCGACGCC GCAAGAAAAC CGATGTCGAG GTGTCCGAGG AGGCCACGGA CGAGACCGCG
GCGGCCGACA GCGACGCCGC AGACCAGGAT GACGGTATCG AGGATGTGGC CGACGAGGAT
GTGGCCGAAG AGATCCGCCG CCCCCGCCAG CGCCGGGAGC GCCGCTACAA GATCCAGGAA
GTCATCAAGG TCCGTCAGGT CCTGCTGGTT CAGGTCGTCA AGGAAGAGCG TGGCAACAAG
GGCGCGGCCC TGACCACCTA TCTCAGCCTC GCGGGCCGCT ACTGCGTGTT GATGCCCAAC
ACCGCCCGCG GCGGCGGCAT CAGCCGCAAG ATCACCAATG CAGTGGACCG CAAGAAACTC
AAGGAGATCG CCTCCGAGAT CGAGGTGCCG CGCGGCGCGG GCCTGATCGT GCGCACGGCG
GGGGCCAAGC GGACCAAGAC CGAAATCAAG CGGGACTACG ACTACCTCAA GCGGCTATGG
GAGCAGATCC GCGACTTGAC CCTGAAATCC ATCGCGCCCG CCCCGATCTA TGAGGAAGGC
AACCTCATCA AGCGCTCGAT CCGCGATCTT TACAGCCGCG ATATCGACGA GGTGCTGGTC
GAGGGGGAAG AAGGCTACCG GGTGGCCAAG GACTTCATGA AGATGCTCAT GCCGTCCCAC
GCCAAGAACG TGAAGCTCTA CAATGAGAAC CTGCCGCTCT TTGCGCGGTA TCAGGTGGAA
AGCTACCTCG CGGGCATGTT CAACCCCACG GTGCAGCTGA AATCCGGGGG CTACCTCGTG
ATCGGCGTGA CCGAGGCGCT GGTGGCGATC GACGTGAACT CGGGCCGGGC CACCAAGGAA
GGCTCGATCG AGGAGACCGC GCTCAAGACA AACCTGGAGG CCGCCGAGGA AGTGGCCCGC
CAGGTCCGCC TGCGCGACCT CGCCGGTCTG ATCGTGATCG ACTTCATCGA CATGGAAGAG
CGGCGCAACA ATACCGCTGT CGAGAAGCGT CTGAAGGACA AGCTGAAGAC CGACCGCGCG
CGCATCCAGG TGGGCCGCAT CTCGGGCTTT GGCCTTCTGG AGATGTCGCG CCAGCGCCTG
CGTCCGGGGA TGCTGGAAAT CACCACCCAG CCTTGCAACC ATTGTCATGG CACCGGGCTG
ATCCGGTCGG ATAATTCCTT GGCGCTGTCG ATCGTTCGCG CGCTGGAAGA AGAGGGCATG
CGCCGCCGCG TGCGCGAGGT TCTCGTCAAG GCGCCGGTCA ATGTCATCAA CTACCTCTTC
AACGAAAAGC GCGAGCATAT CGCGCTGATC GAGGGGCGCT ACGGTTTGTC CGTGCGGCTG
GAGGCCTCGA ACGAACTTTC GGGGGCGGAC TTCACCATCG ACAAGTTCAA GACCGCGACC
CGCAAGGTGG TCGAGCTTGA CGCGCCGGTT GTGTCGATCG ACACCTCGGG CGTGGACGAG
GCCGAGATCG TGGAGGAGCC CGACGAGGAA GAGGCCGACA CCGAGACCGA GGCAGAGACT
GCCGCCACCG AGGAGACCAG CGAAGAGCAG GCCCCGCGCA AGCGCCGCCG CCGTCGCCGC
CGCTCCCGCC GGGGCGGTGG GACCGAGAAC GGCGAGTCCA ACGGAGATGG CAGCGACGAG
GCACAATCCG CCGCAGACGC GGACTCCTCG GATCAAGCTG ACATTTCCGA AGAAGCGGAG
TCCTCCCAAC CGGCGGTTGA GGCAGAGGCA GAAGAGGCCC CGAAACCCAA GCGTCGTCGG
CGTCGTCGCC GGAAGTCCGA CGCAGAAGAG GGTGAAGCTG CTCCCGATGG GGATGCTGTC
TCTGAAGACG TCTCTGCGCC TGAACCCGCC CCGACCCCCG AGCCGGTTGC GGAGGCCAAG
GCCGACGCGC CTGCGGCGGA AGCCGAGCCT GTAGCGGAGG CCGAAGCGCC GGTTGAACCC
GCAGAGTCTG AGGCGCCCGC CCCGGAGGTC GATCCCACGC CGGAGACGGC CGAAACGGCC
CCTGTCGAAC ACGGAGACGA GGCATCCGAC ACGACCGATG AGGAGACCGG CCAACCGGTC
TCCGAAGAGG CATCGGAAGC GGAGGCCGAA GACCCCCAAG CCGTGGAGCC CGAGCTTGCA
GAGGCCGCCA ACGAGGCTGC GCCCGCGCAG GACGACGACA CCAAGCCCAA GCGGCGCGGG
TGGTGGTCGC TCGCGCGCTG A
 
Protein sequence
MAKKMLIDAT HAEETRVVVV DGTKVEEFDF ESVNKRQLAG NIYLAKVTRV EPSLQAAFVD 
YGGNRHGFLA FSEIHPDYYQ IPVADREALL AEEMAFATAD AEEDEVKPKK RRSRRRKKVE
TSDEDAAEVT ADSNAAEAET AQDADAADSP DAKDAPAVEA AQAAPEDVAE DAPTTETEAQ
TAEAEPAETA EADEDTAKPP MPHAVEGDDP TVKSEEVSEA DADPQAEPGS PAAEEAPAED
APAEDKPVAE AAPRQTQSIP GMDVVETDSE AEDGPILVAE AAGAGPDGDK ETAEKPKRRR
SRRRKKTDVE VSEEATDETA AADSDAADQD DGIEDVADED VAEEIRRPRQ RRERRYKIQE
VIKVRQVLLV QVVKEERGNK GAALTTYLSL AGRYCVLMPN TARGGGISRK ITNAVDRKKL
KEIASEIEVP RGAGLIVRTA GAKRTKTEIK RDYDYLKRLW EQIRDLTLKS IAPAPIYEEG
NLIKRSIRDL YSRDIDEVLV EGEEGYRVAK DFMKMLMPSH AKNVKLYNEN LPLFARYQVE
SYLAGMFNPT VQLKSGGYLV IGVTEALVAI DVNSGRATKE GSIEETALKT NLEAAEEVAR
QVRLRDLAGL IVIDFIDMEE RRNNTAVEKR LKDKLKTDRA RIQVGRISGF GLLEMSRQRL
RPGMLEITTQ PCNHCHGTGL IRSDNSLALS IVRALEEEGM RRRVREVLVK APVNVINYLF
NEKREHIALI EGRYGLSVRL EASNELSGAD FTIDKFKTAT RKVVELDAPV VSIDTSGVDE
AEIVEEPDEE EADTETEAET AATEETSEEQ APRKRRRRRR RSRRGGGTEN GESNGDGSDE
AQSAADADSS DQADISEEAE SSQPAVEAEA EEAPKPKRRR RRRRKSDAEE GEAAPDGDAV
SEDVSAPEPA PTPEPVAEAK ADAPAAEAEP VAEAEAPVEP AESEAPAPEV DPTPETAETA
PVEHGDEASD TTDEETGQPV SEEASEAEAE DPQAVEPELA EAANEAAPAQ DDDTKPKRRG
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