Gene Dshi_2208 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_2208 
Symbol 
ID5713861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2333780 
End bp2335267 
Gene Length1488 bp 
Protein Length495 aa 
Translation table11 
GC content74% 
IMG OID641268130 
Productputative D-alanyl-D-alanine carboxypeptidase/endopeptidase 
Protein accessionYP_001533545 
Protein GI159044751 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 
TIGRFAM ID[TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00369508 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGGC GCGCCCTGCT GAGCGGGCTG GCCGCGCAGG CCGCCCTTCT GCCCGGCGCC 
GCCCGCGCGC TCGGCAGCTC GCCGCACCCC GCGCCCCGAC CCGACGGGCT CTGGCGCCGC
GCCGTGCCCG AGCTCGGGGA GCTGCTGCGC GCCGCCGATC TCGGCGGACA GACCAGCCTT
GCGGTGATCG ACCTGCGCAG CGGGCTGGCG CTGGAATCCG TCGCCGGGGG CACCCCCCTG
CCACCGGCCA GCGTCGCCAA GGCCGCCACC GCGCTCTACG GGCTGCGCGT GCTGGGGCCG
GAACATCGCT ACACCACCCG CCTGCTGGCC ACGGGCCCGA TCCGCGCGGG CCGCCTCGAC
GGCGACCTGA TCCTCGCCGG CAGCGGCGAT CCCAGCCTCG ATACCGCCGC CCTGGCCGGG
CTTGCCGACC GGTTGCGCGC GGCCGGGGTC TCGGAGGTCG CGGGCGCGCT CCGGGTGCAG
GGCAGCGCGC TCCCCGAGAT CCGCTCCATC GACCCGGGCC AGCCCGACCA CCTCGGCTAC
AGCCCGGCCA TCGCGGGGCT CAACCTCAAC TTCAACCGGG TCTATTTCGA ATGGAAACGC
CAGGGCAGCG ACTATGCCAT CACCATGGAC GCCCGCACCG GCGCGTTGCG CCCGCAGGTG
CGCGTGTCGT CCATGTCGGT GCAGCCCCGG AACCTGCCGA TCTACACCTA CGAACAACGC
GGCGCAGCCG ACCACTGGAC CGTCGCCCGC GACGCCCTGG GTGCCGAGGG CGGCCGCTGG
CTCCCGGTGC GCAACCCGGC CGCCTATGCC GCGGACGTGT TCCGCACGCT CTGCGGCGCG
CAGGGCATCC GCGTGACCCT CGGCCCGCCC CTGGCGGTGC TGCCGGACAC CGCGACGCTC
ATCGCCAGCC ATGACAGCGA AACCCTCCCC GGCCTGCTGC GCGGGATGCT GAAATACTCC
ACCAACGTCA CCGCCGAATG CATCGGCCTG ACCGCTTCCA CCGCGCTCGG CGCCCGCCCC
GACAGCCTCC AAGCCTCCGG CGCGCAAATG GCCGCCTGGC ACAGCGCCCA ACTGATGGGC
GCAGGGCCGA TCCGCTTTGC CGACCATTCC GGCCTCGGCG ACCGCTCCCG CATCTCCAGC
CTCGACATGG CCCGCCTGCT GAGCACCCAT GGCACCCGAA CCGCGCTCAC GCCGCTGCTG
AAACCCTACC TGCCACGGGA TGCCAGCGGC GCGCGCATGG CCAGCGCCCC GGCGCAGGTG
GTGGCCAAGA CCGGCACGCT CAACTTCGTC TCCGGCCTCG CAGGCTACAT CACGCCACCC
TCGGGCCGCG CGCTGGCCTT CGCGATCTTC TCGGCCGACA TCGACCGCCG CGCGGCCCTC
AGCCGCGCCG AACGCGAACG CCCCGAGGGG GGCCGCGCCT GGGCCCGCCG CGCGCGCCGT
TTGCAAAATG ATCTCGTCCT GCGCTGGAGC CGCCTCTACG GCGCCTGA
 
Protein sequence
MNRRALLSGL AAQAALLPGA ARALGSSPHP APRPDGLWRR AVPELGELLR AADLGGQTSL 
AVIDLRSGLA LESVAGGTPL PPASVAKAAT ALYGLRVLGP EHRYTTRLLA TGPIRAGRLD
GDLILAGSGD PSLDTAALAG LADRLRAAGV SEVAGALRVQ GSALPEIRSI DPGQPDHLGY
SPAIAGLNLN FNRVYFEWKR QGSDYAITMD ARTGALRPQV RVSSMSVQPR NLPIYTYEQR
GAADHWTVAR DALGAEGGRW LPVRNPAAYA ADVFRTLCGA QGIRVTLGPP LAVLPDTATL
IASHDSETLP GLLRGMLKYS TNVTAECIGL TASTALGARP DSLQASGAQM AAWHSAQLMG
AGPIRFADHS GLGDRSRISS LDMARLLSTH GTRTALTPLL KPYLPRDASG ARMASAPAQV
VAKTGTLNFV SGLAGYITPP SGRALAFAIF SADIDRRAAL SRAERERPEG GRAWARRARR
LQNDLVLRWS RLYGA