| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2199 |
|---|
| Symbol | |
|---|
| ID | 5713852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2326735 |
|---|
| End bp | 2327424 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641268121 |
|---|
| Product | aspartate/glutamate racemase family protein |
|---|
| Protein accession | YP_001533536 |
|---|
| Protein GI | 159044742 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1794] Aspartate racemase |
|---|
| TIGRFAM ID | [TIGR00035] aspartate racemase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGA TCGGAATTCT CGGGGGCATG TCCGCCGCGT CCACCCAGCT CTACTATTCC
GAGCTGTGCA GGCTCACGCG CGCACGGCTC GGCGGCCTGC ATTCGCCGCA GCTTCTGATA
CGGTCGCTGG ATTTTGCCGA GATCGAGGCG CTGCAGGCCG CGGGCGCGTG GACCCGCGCC
GGCACGATTC TGAACAGCGA AGCGCAAGCG CTCGAACGGG GCGGGGCCGG GATCCTGCTT
CTGGCGACGA ATACCATGCA CAAGCTGGCG GATCGGATGA TGGAGGGCGT CGGAATCCCG
CTGCTGCACA TTGCGGATGC GACGGCGCAA GCGATCCTGC AGGCCGGATT GCGGCGTCCG
GGGCTGATGG CAACCGCCTT CACCATGGAG CAGCAGTTCT ATACCGGGCG CCTGAGGGCC
GCAGGGCTGG ACCCGGTCCT GCCCGACCCG TCCGACCGTG CCACGACGCA CCGGGTGATC
TATGACGAGC TGTGCAAGGA CATCCGGACC GAGCGGAGCG AAACCGCGTT CGTTCAAATC
GCGGGGCGCC TGGCCGATGG GGGCGCGGAT TGTCTGATCC TGGGCTGCAC CGAGGTCGGT
ATGCTGCTCC ACCAAGGCAA CGTGGCCGTT CCGGTGTTCG ACACGACGCG CATCCACTGT
GCGACCGCAC TCGACCGCGC CATGGCGTAA
|
|---|
| Protein sequence | MKTIGILGGM SAASTQLYYS ELCRLTRARL GGLHSPQLLI RSLDFAEIEA LQAAGAWTRA
GTILNSEAQA LERGGAGILL LATNTMHKLA DRMMEGVGIP LLHIADATAQ AILQAGLRRP
GLMATAFTME QQFYTGRLRA AGLDPVLPDP SDRATTHRVI YDELCKDIRT ERSETAFVQI
AGRLADGGAD CLILGCTEVG MLLHQGNVAV PVFDTTRIHC ATALDRAMA
|
|---|
| |