| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2148 |
|---|
| Symbol | |
|---|
| ID | 5713144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2277653 |
|---|
| End bp | 2278543 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641268070 |
|---|
| Product | putative S-adenosylmethionine uptake transporter |
|---|
| Protein accession | YP_001533485 |
|---|
| Protein GI | 159044691 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.820998 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGGG ATCGCCCCCT TCTCGGCATC GGCCTGATGC TGCTTTTTTG TGCTCTGGCG
CCGCTCGGCG ACGGGATCGC CAAGGTGCTC GGCGATGTCG TGCCCCTGGT TGTGCTGCTG
TTCGTGCGAT TTGCCAGCCA GGCCATTCTG CTCACGCCGC TTACGCTGCG TCGGGGCCCG
CAGCTCTCGG GGCGGCAATG GCGGTTGATG GCGGTGCGTA CGGGACTGCA CATGCTGGGC
ATCGGCATGA TGTTCACGGC GTTGCGCTAC CTGCCGCTGG CCGATGCCAT CGCGATTGCC
TTCGTGATGC CATTCTTCAT GCTGGTGCTG GCAAAATACG TACTGGGCGA AGAGGTTGGG
CCGCGCCGGA TCTGGGCCTG CGTGGTCGGG TTCGCCGGCA CGTTGCTGAT CGTGCAGCCG
AGTTTCGCGC AGGTCGGCGC CCCGGCCCTG CTGCCGCTGG GGGTTGCTGT GTGCTTTGCA
CTGTTCATGC TGACCACTCG GCAACTCGCG CGCGATGTGG ACCCGGTGCG GCTTCAAGCC
CTGTCGGGCT GGATGGCAAG TGCGGTGCTG TTGCTTGGAT GGCTGATCTC GGCCGAAGCT
CTCGGCGCGC GCCAGTTCTG GCCTGATGGT CCGGTTCTGC TGCTTCTGGC CCTGCTCGGC
GCGATAGGCA CCGCGGCGCA TCTCGCCATG ACTTGGGCCT TGCGGCTGGC ACCCTCCGCG
ACGCTGGCCC CGATGCAGTA TCTCGAGATA CCCTTCGCCA CGGCGATCGG CTGGATGATC
TTCCAAGATC TGCCGAATGG TCTTGCGGCG CTGGGGATCG CTGTCACGGT CTCGGCCGGT
CTCTATATCC TGTGGCGGGA GCATCGCCCG GCATCCGAAC TGGGCCCCTG A
|
|---|
| Protein sequence | MPRDRPLLGI GLMLLFCALA PLGDGIAKVL GDVVPLVVLL FVRFASQAIL LTPLTLRRGP
QLSGRQWRLM AVRTGLHMLG IGMMFTALRY LPLADAIAIA FVMPFFMLVL AKYVLGEEVG
PRRIWACVVG FAGTLLIVQP SFAQVGAPAL LPLGVAVCFA LFMLTTRQLA RDVDPVRLQA
LSGWMASAVL LLGWLISAEA LGARQFWPDG PVLLLLALLG AIGTAAHLAM TWALRLAPSA
TLAPMQYLEI PFATAIGWMI FQDLPNGLAA LGIAVTVSAG LYILWREHRP ASELGP
|
|---|
| |