Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2138 |
Symbol | |
ID | 5713134 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 2267574 |
End bp | 2268803 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641268060 |
Product | hypothetical protein |
Protein accession | YP_001533475 |
Protein GI | 159044681 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.123403 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.331255 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGCAGCG ACCCGAAAAG AGGCGCGCCA CGGCCCGACA AGAGCAGAAG GCTTGAGCCC ATGACCGACA TCTCCCAGCC TCCCAAGTGC GGCGCGCGGC GCACCGCCTC GGTATTGGCG ATCTGTAGCG CCCTGGCCCT GGCGGGCTGC GACACCTCGA CCATGGATTT CGACATGCGG GACGCATTCG GCGGCCCGTT CTCGACTGCC GGCGCAGTGG GGGCGCCCGC CGCCCCACGG CCCGAGCCCG ATGAGCGCGG GGTGATTTCC TATGCCGACT ATCAGGTGGT CCTGTCGCGG CAGGGCGACA CCGCCAACAC CATCGCCGCG CGGCTCGGGG TCGACCCGGG CGCGCTGGCA CGGTTCAACG GGCTGAACCC GGAAACCGTG CTGCGAGAGG GCGAGGTTCT GGCCCTGCCG ACCCGGGTGG CAGAGCCTGT GGGCACCACG GATATCGCGG TCCTCGCTTC GGGCGCGATC GAACGGGCGG AGCTGCCCGA AGGCACCAGC AGCGTAGACA CCCCGCTGGT GCGCGCCGTG CCCTCGGCGG AACTGTCCGG CCCGACACCA ATGCAACACA AGGTGCAGCG CGGGGAGACA GCCTATTCCA TCGCGCGGCT CTACGACATC TCGGTGCGAG CTTTGGCGGA CTGGAACGGA CTGGGTCCGG ATCTCGCGGT GCGCGAGGGA CAAGTTCTGC TGGTGCCGCT GACCACAGCG GCTGCGGCCC CTGCCGCCGC CCCCGAGCAG CCCGCGCCCG GGCAGGGTAG CGTCGCGCCG GTCCCACCGA GTGCCAGTAC CCCCCTGCCC GAGCCGGAAC CCGTGGCCGC CGTGCCCGAC GCGCCCGACA TGGGGCAGTT CCAGACCGAG GCCTCGGACA GTGCGAGCTT CGCCTTCCCG GTCGCGGGCC GGATCATCCG CGATTACGAC AAGGGCCGGA ACGACGGCAT CGGCATCGCT GCGGACCCGG GCACGCCCGT GGTGGCGGCG GGCGACGGCG AGGTCGCCGC GATCACCCGT GATACGGACC AGGTGCCGAT CCTGGTGCTG CGGCACCCGG ACAACCTGCT GACGGTCTAC GCCAATGTGG GAGATATCGC CGTGGAGAAG GGCGATACCG TGCGTCGGGG ACAGCAGGTC GCGACCGTGG CCACGGGCGA TCCGTCCTTC CTGCATTTCG AGATCCGCGA AGGGATCGAA AGCGTCGACC CGGTGCCCTA CCTGAATTGA
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Protein sequence | MRSDPKRGAP RPDKSRRLEP MTDISQPPKC GARRTASVLA ICSALALAGC DTSTMDFDMR DAFGGPFSTA GAVGAPAAPR PEPDERGVIS YADYQVVLSR QGDTANTIAA RLGVDPGALA RFNGLNPETV LREGEVLALP TRVAEPVGTT DIAVLASGAI ERAELPEGTS SVDTPLVRAV PSAELSGPTP MQHKVQRGET AYSIARLYDI SVRALADWNG LGPDLAVREG QVLLVPLTTA AAAPAAAPEQ PAPGQGSVAP VPPSASTPLP EPEPVAAVPD APDMGQFQTE ASDSASFAFP VAGRIIRDYD KGRNDGIGIA ADPGTPVVAA GDGEVAAITR DTDQVPILVL RHPDNLLTVY ANVGDIAVEK GDTVRRGQQV ATVATGDPSF LHFEIREGIE SVDPVPYLN
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