Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2098 |
Symbol | |
ID | 5713093 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 2221467 |
End bp | 2222837 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641268020 |
Product | putative outer membrane protein tolC |
Protein accession | YP_001533436 |
Protein GI | 159044642 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTCTCCA AATTCGTGCG TCATACCGTC CTCGGGGCGG CCGTCCTGTG CGCCGCGTCC GGTGCCGCAA TGGCCCAATC CCTGACCGAT GCGCTGGTCG ATACCTACAA GAACAGCGAA CTGATCGAGC AGAGCCGCGC GCTCCTGCGG TCCGCGGACG AGGACGTAGC AATCGCCGTG TCCCGGCTCC GCCCGATCCT GAACTACTCG GCCGATTACG GCTATTCGGA CAATTTCGGC CGGGAAACCG ACAATGGCTC GCTCGGGATC ACCGCGTCCC TGCTGCTGTT CGACTTCGGC CGCACCCGGC TGGGGATCGA GGCCAACAAG GAACTGGTGC TGGCGACGCG CGAGGCCCTG CGCGCCACCG AGCAGGACGT CCTGCTGGAG GGGGTGAGCG CCTTCCTGAA CGTCCGCGGC GCCAATGACA ACGTGGACCT GCGGCGCAAC AACGTGCGCG TGATCACCGA ACAGCTGCGC GCCGCGCGCG ATCGGTTCGA GGTCGGCGAG GTGACCCGCA CGGATGTCGC CCAGGCCGAG GCCCGGCTGG CGGAGGCCAA TGCCAACCTG ACCCGCGCCC TGGGTCAGCA GGCCGCCGCG CGGGAGGTGT ATCGCGCCGT GGTCGGACAG TTCCCGCAAT CCCTGGCCCC GCCGCCCCCG TCACCGGCGA TCCCCGCCAC CGTCGAGGAG GCGACCTCGA TCGCCGAGCG CACGCACCCC TCGATCCTGC AGGGCCGCCA TAATGTGCGC GCCTCCGAGA TCGTGGCGGA GGTCGCCCAG AAGGCGATCC TGCCCACGGC GAGCGCCACG GCCAACATCT CCCGGTCGAT CCGCGACTCG CTCGATGACA CGACCGATTC CAGCATCGGG CTGACGCTGT CGGGCCCGAT CTACCAGGGC GGCGGTCTGA GCGCCCAGTA CCGTCAGGCA CTGGCGGGGG TCGAGAACGC CCGCGCCACC CTGAACCAGT CGGTGCTGGT GATCCGGCAG CGCGTCGGCA TCGCCTGGGC CGAAATCCTC GTCACCCGGG CCAATATCGA CTCCACCCGC CGCCAGGTCG AGGCCGCCGA GATCGCCTTC GAAGGTGTGA CCGAGGAAGC CCGCCTGGGC GCGCGGACCA CGCTCGATGT GCTGGACGCC GAACAGGATG TGCTCGACGC GCGCACAGCC CTGCTCTCGG CCGAGATCTC CGCGGTGCAG GCGGTCTATG ACCTGTTGTC GGCCATGGGG CTGATGACCG TAGACTACCT CGGCCTGCCG GTGCCGACCT ACGACCCGGC CGCGTATTTC AACGCGGTGT CCAATGCGCC GGCGACCAGT ACGCAGGGTG CGCGGCTCGA CCGGGTGCTG CAAAGCATCA TGCGCGACTA A
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Protein sequence | MFSKFVRHTV LGAAVLCAAS GAAMAQSLTD ALVDTYKNSE LIEQSRALLR SADEDVAIAV SRLRPILNYS ADYGYSDNFG RETDNGSLGI TASLLLFDFG RTRLGIEANK ELVLATREAL RATEQDVLLE GVSAFLNVRG ANDNVDLRRN NVRVITEQLR AARDRFEVGE VTRTDVAQAE ARLAEANANL TRALGQQAAA REVYRAVVGQ FPQSLAPPPP SPAIPATVEE ATSIAERTHP SILQGRHNVR ASEIVAEVAQ KAILPTASAT ANISRSIRDS LDDTTDSSIG LTLSGPIYQG GGLSAQYRQA LAGVENARAT LNQSVLVIRQ RVGIAWAEIL VTRANIDSTR RQVEAAEIAF EGVTEEARLG ARTTLDVLDA EQDVLDARTA LLSAEISAVQ AVYDLLSAMG LMTVDYLGLP VPTYDPAAYF NAVSNAPATS TQGARLDRVL QSIMRD
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