Gene Dshi_2098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_2098 
Symbol 
ID5713093 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2221467 
End bp2222837 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content69% 
IMG OID641268020 
Productputative outer membrane protein tolC 
Protein accessionYP_001533436 
Protein GI159044642 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTCTCCA AATTCGTGCG TCATACCGTC CTCGGGGCGG CCGTCCTGTG CGCCGCGTCC 
GGTGCCGCAA TGGCCCAATC CCTGACCGAT GCGCTGGTCG ATACCTACAA GAACAGCGAA
CTGATCGAGC AGAGCCGCGC GCTCCTGCGG TCCGCGGACG AGGACGTAGC AATCGCCGTG
TCCCGGCTCC GCCCGATCCT GAACTACTCG GCCGATTACG GCTATTCGGA CAATTTCGGC
CGGGAAACCG ACAATGGCTC GCTCGGGATC ACCGCGTCCC TGCTGCTGTT CGACTTCGGC
CGCACCCGGC TGGGGATCGA GGCCAACAAG GAACTGGTGC TGGCGACGCG CGAGGCCCTG
CGCGCCACCG AGCAGGACGT CCTGCTGGAG GGGGTGAGCG CCTTCCTGAA CGTCCGCGGC
GCCAATGACA ACGTGGACCT GCGGCGCAAC AACGTGCGCG TGATCACCGA ACAGCTGCGC
GCCGCGCGCG ATCGGTTCGA GGTCGGCGAG GTGACCCGCA CGGATGTCGC CCAGGCCGAG
GCCCGGCTGG CGGAGGCCAA TGCCAACCTG ACCCGCGCCC TGGGTCAGCA GGCCGCCGCG
CGGGAGGTGT ATCGCGCCGT GGTCGGACAG TTCCCGCAAT CCCTGGCCCC GCCGCCCCCG
TCACCGGCGA TCCCCGCCAC CGTCGAGGAG GCGACCTCGA TCGCCGAGCG CACGCACCCC
TCGATCCTGC AGGGCCGCCA TAATGTGCGC GCCTCCGAGA TCGTGGCGGA GGTCGCCCAG
AAGGCGATCC TGCCCACGGC GAGCGCCACG GCCAACATCT CCCGGTCGAT CCGCGACTCG
CTCGATGACA CGACCGATTC CAGCATCGGG CTGACGCTGT CGGGCCCGAT CTACCAGGGC
GGCGGTCTGA GCGCCCAGTA CCGTCAGGCA CTGGCGGGGG TCGAGAACGC CCGCGCCACC
CTGAACCAGT CGGTGCTGGT GATCCGGCAG CGCGTCGGCA TCGCCTGGGC CGAAATCCTC
GTCACCCGGG CCAATATCGA CTCCACCCGC CGCCAGGTCG AGGCCGCCGA GATCGCCTTC
GAAGGTGTGA CCGAGGAAGC CCGCCTGGGC GCGCGGACCA CGCTCGATGT GCTGGACGCC
GAACAGGATG TGCTCGACGC GCGCACAGCC CTGCTCTCGG CCGAGATCTC CGCGGTGCAG
GCGGTCTATG ACCTGTTGTC GGCCATGGGG CTGATGACCG TAGACTACCT CGGCCTGCCG
GTGCCGACCT ACGACCCGGC CGCGTATTTC AACGCGGTGT CCAATGCGCC GGCGACCAGT
ACGCAGGGTG CGCGGCTCGA CCGGGTGCTG CAAAGCATCA TGCGCGACTA A
 
Protein sequence
MFSKFVRHTV LGAAVLCAAS GAAMAQSLTD ALVDTYKNSE LIEQSRALLR SADEDVAIAV 
SRLRPILNYS ADYGYSDNFG RETDNGSLGI TASLLLFDFG RTRLGIEANK ELVLATREAL
RATEQDVLLE GVSAFLNVRG ANDNVDLRRN NVRVITEQLR AARDRFEVGE VTRTDVAQAE
ARLAEANANL TRALGQQAAA REVYRAVVGQ FPQSLAPPPP SPAIPATVEE ATSIAERTHP
SILQGRHNVR ASEIVAEVAQ KAILPTASAT ANISRSIRDS LDDTTDSSIG LTLSGPIYQG
GGLSAQYRQA LAGVENARAT LNQSVLVIRQ RVGIAWAEIL VTRANIDSTR RQVEAAEIAF
EGVTEEARLG ARTTLDVLDA EQDVLDARTA LLSAEISAVQ AVYDLLSAMG LMTVDYLGLP
VPTYDPAAYF NAVSNAPATS TQGARLDRVL QSIMRD