| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2010 |
|---|
| Symbol | phnC1 |
|---|
| ID | 5713005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2129686 |
|---|
| End bp | 2130483 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641267934 |
|---|
| Product | phosphonates import ATP-binding protein |
|---|
| Protein accession | YP_001533350 |
|---|
| Protein GI | 159044556 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3638] ABC-type phosphate/phosphonate transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02315] phosphonate ABC transporter, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.194756 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0179512 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGTC TCGAGAAGCT GACCAAGACC TACAAGACCG GGGACAAGGC CCTGACGGAG
ATCGACCTGG AGGTGCCATC GGGGCAGGTC CTGGCGCTGA TCGGGCCGTC GGGGGCGGGC
AAGTCCACCA TGATCCGCTG CATCAACCGT CTGGTGCCGC CCACGAGCGG GGCGGTGTGG
CTGGACGATG TGAATATCAC CGCGCTGGGG TCGGGCGGCT TGCGCCGGGC GCGGCGCGAG
ATGGGCATGA TTTTCCAGGA ATACGCGCTG GTCGAGCGGC TGACGGTGAT GGAGAACGTG
TTGTCGGGGC GGTTGGGCTT TGTCGGGTTC TGGCGGTCCT TCCTGCGGCG CTATCCCCAG
TCGGATGTGG ACGAGGCGTT TCGCCTTCTG GACCGGGTTG GGCTGTTGCA CATGGCCGAC
AAGCGGGCGG ACGAGTTGTC CGGCGGCCAA CGGCAGCGCG TGGGCATTTG CCGGGCGCTG
ATCCAGAACC CCAAGCTGCT GTTGGTGGAT GAGCCGACCG CATCGCTGGA CCCCAAGACC
TCCCGCCAGA TCATGCGGCT GATCACCGAG CTGTGCGCCG AGCGCGGGTT GGCGGCGATC
ATCAACATCC ACGACGTGGC ACTGGCGCAG ATGTTCGTGC CGCGCGTGGT GGGTCTGCGC
TTTGGCGAGA TAGTCTATGA CGGGGGGCCC ACGGGGCTGA CACCAGACAA GCTGACCGAG
ATTTACGGCG AGGAGGATTG GGAGGCCACC ATCGAGAAGG TGGAGGACGA GGACGCGCCC
GTGGAGGCCG CCGAATGA
|
|---|
| Protein sequence | MLRLEKLTKT YKTGDKALTE IDLEVPSGQV LALIGPSGAG KSTMIRCINR LVPPTSGAVW
LDDVNITALG SGGLRRARRE MGMIFQEYAL VERLTVMENV LSGRLGFVGF WRSFLRRYPQ
SDVDEAFRLL DRVGLLHMAD KRADELSGGQ RQRVGICRAL IQNPKLLLVD EPTASLDPKT
SRQIMRLITE LCAERGLAAI INIHDVALAQ MFVPRVVGLR FGEIVYDGGP TGLTPDKLTE
IYGEEDWEAT IEKVEDEDAP VEAAE
|
|---|
| |