| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1996 |
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| Symbol | xylA |
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| ID | 5712991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2114512 |
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| End bp | 2115816 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641267920 |
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| Product | xylose isomerase |
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| Protein accession | YP_001533336 |
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| Protein GI | 159044542 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2115] Xylose isomerase |
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| TIGRFAM ID | [TIGR02630] xylose isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00412566 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.553751 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATT TTTTCGCGGG GATCCCCGCC GTCACCTATG AAGGCCCCGA GGCCCGCAGC
GACTTCGCCT TCCGGCACTA CAACCCCGAC GAGATGGTCA TGGGCAAGCG GATGGAGGAT
CAGCTGCGCT TCGCCGTGGC CTGGTGGCAT TCCTTTGCTT GGGAAGGGGG CGACCCGTTC
GGCGGTCCGA CCTTCCAGCG CCCGTGGTTC GGCGACACCC TGGATCATGC CCGCGCCAAG
GCCGATGCGG CGTTCGAGAT GTTCCGCATC CTGAACGTGC CGTTCTATTG CTTCCACGAC
GCCGATATCC GCCCCGAGGG CGCGAGTTTC GCCGAGACCA CCGCGAACCT TGAAGCGATG
GTGGACTACC TGGGCCAGAA GCAGGAGGCG AGCGGCAAGC GGCTGCTCTG GGGCACCGCG
AACCTGTTCT CGCACCGGCG CTACATGGCT GGGGCGGCGA CGAACCCGGA CCCGGATGTG
TTCGCCTATG CCGCCGCCAC CATCAAGACC TGCATGGACG CGACCCACAA ACTGGGCGGC
GCGAATTATG TCCTGTGGGG CGGGCGCGAG GGGTACGAGA CCCTGCTCAA CACCGATCTG
GGGCGCGAGC GGGAGCAGGC GGGCCGGATG CTGCAGATGG TTGTGGATTA CAAGCACAAG
ATCGGGTTCG AGGGCACGAT CCTGCTGGAG CCGAAACCGC AGGAGCCCAC GAAGCACCAA
TATGATTACG ACGTGGCCAC GGTGTTCAGC TTTCTGTCGG AGTTCGGCCT GCAGGACGAG
GTGAAGATGA ATATCGAGCA GGGCCATGCG ATCCTGGCCG GGCATTCCTT CGAGCATGAG
CTGGCGCTGG CGCGGGAGTT CGGGATCCTG GGCTCCATCG ACATGAACCG CAACGATTAC
CAGTCGGGCT GGGACACCGA CCAGTTCCCG AACAACATCC CCGAGGTGGC GCTGGCCTAT
TACGAGATCC TGCGCGCGGG CGGCTTCGAT ACCGGGGGCA CCAATTTCGA TTCCAAGCTG
CGGCGGCAAT CGCTGGACCC GGCGGACCTG ATCGCGGCCC ATGTGGCGGC GATGGATGTC
TGTGCCGCGG GGCTGAAGGC GGCGGCACGG ATGCTGGAGG ATGGCGAGTT GGAGCAGCGG
CGCGAGGATC GCTATGCGGG CTGGCGCGCG CCCTCGGCGG AAGCGATGCT GAACGGTGGC
AAGCTGGAGG ACTGCTTTGC CCATGTGATG GAGACCGGGC TTGATCCGCA GCCGGTCTCG
GGCGGGCAGG AACGGCTGGA GGCGCTGGTC GCGCGATACC TGTAA
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| Protein sequence | MSDFFAGIPA VTYEGPEARS DFAFRHYNPD EMVMGKRMED QLRFAVAWWH SFAWEGGDPF
GGPTFQRPWF GDTLDHARAK ADAAFEMFRI LNVPFYCFHD ADIRPEGASF AETTANLEAM
VDYLGQKQEA SGKRLLWGTA NLFSHRRYMA GAATNPDPDV FAYAAATIKT CMDATHKLGG
ANYVLWGGRE GYETLLNTDL GREREQAGRM LQMVVDYKHK IGFEGTILLE PKPQEPTKHQ
YDYDVATVFS FLSEFGLQDE VKMNIEQGHA ILAGHSFEHE LALAREFGIL GSIDMNRNDY
QSGWDTDQFP NNIPEVALAY YEILRAGGFD TGGTNFDSKL RRQSLDPADL IAAHVAAMDV
CAAGLKAAAR MLEDGELEQR REDRYAGWRA PSAEAMLNGG KLEDCFAHVM ETGLDPQPVS
GGQERLEALV ARYL
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