| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1995 |
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| Symbol | |
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| ID | 5712990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2113662 |
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| End bp | 2114381 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641267919 |
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| Product | hypothetical protein |
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| Protein accession | YP_001533335 |
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| Protein GI | 159044541 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02595] PEP-CTERM putative exosortase interaction domain
[TIGR03370] variant PEP-CTERM putative exosortase signal, Roseobacter type |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00112898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.836416 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGACTTG GTAAATTTCT CGCGACAACC GCTGTCGCGG TGATCGTCGC AGGTGGCGCC
TCCGCGTCGA CCATCAGCGA CATCGTGATC ACCAGCGTGA CAGGTGAATG GACCAGCGTC
ACCGGCGGCA CGAACGTGAG CGGGCTCACC ACAAACGCCA TTTCCTGGGG CACGACCACG
CCCTCCGGTG GACCGCAGAG CGGCTACACT TTTGTTGGCG TCGCCCCGCC TGCAACAGCC
CCTTTTTCAT CTGACACGGT GTTCACCCTG GGCAATTTCA CCCACGACAA CTTCCCAATC
AACTCGGGGA CATCCATCAC CGGAGCCACG CTCGACGTGA CCACGGAATT CACGATCGGT
GGTGTCGCAG GATCGCTGAC GTCGCAGTTC ATTTTCGATC ATTTTGAAAC GCCGAACGAT
CCCGGTGGCG CCCCCTGCGC AGCTGGCGGT CCCGAGCCAT GTGGCGACTT GGTGACCCCC
ACCCTGAATG TCGGCGCGTC CGACTCCCTC ACAATCGGTG GGGTAGACTA CTTCGTGTCC
GTGACGGGGT TCAACATGGG CGCCAGCTTC CTGACTGCAG AGAATGCGTC GAACACGACG
ACCCTCCTGG GCACATTCAC CGCTGACGTG GCTGCCATCC CGCTGCCCGC CGCGGGCTGG
ATGCTGCTGG CCGGTGTCGG TGGGCTGGCC GCCCTGCGCC GCCGCAAGAA AGCCGCCTGA
|
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| Protein sequence | MRLGKFLATT AVAVIVAGGA SASTISDIVI TSVTGEWTSV TGGTNVSGLT TNAISWGTTT
PSGGPQSGYT FVGVAPPATA PFSSDTVFTL GNFTHDNFPI NSGTSITGAT LDVTTEFTIG
GVAGSLTSQF IFDHFETPND PGGAPCAAGG PEPCGDLVTP TLNVGASDSL TIGGVDYFVS
VTGFNMGASF LTAENASNTT TLLGTFTADV AAIPLPAAGW MLLAGVGGLA ALRRRKKAA
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