| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1970 |
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| Symbol | |
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| ID | 5712964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2081843 |
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| End bp | 2083909 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641267893 |
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| Product | TRAP dicarboxylate transporter |
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| Protein accession | YP_001533310 |
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| Protein GI | 159044516 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component
[COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.413092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.415684 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGTGG ACATCCCCCA GATCGAGGAC CCGCTCGAAA CCTACGAGCA TATTCTCGAA
CACGAGGAGC GCGACAGGCA GCCGGTGGCG GTGGCGCTGG ACAATGCGGT AAAGGGCGTG
GGCCATGTGG TGATGTGGGC CAATATCGCG CTCATTGCCG CCATCGTGGC GCAGGTGCTG
TTCCGCTACC TGCTGAACCA GAACTTCCCC AAGCTGGACG AGATCCAGTG GCATTTCTAC
GGCGCGGTGA CGATGATCGG CATCTCCTAC GCGCTGGTCA CGGACAGCCA TGTGCGGGTC
GATCTCTTGC ACATGCAACT CAGCCGCCGG TCCCAGCGGA TCATCGAGGT GCTGGGCATC
CTGTTCCTGC TGGTGCCGCT GATCTACCTG ATGGTGGACC AGGGCTGGGA TTATTTTTAC
GAGAGCTACC GGGTGAACGA GCGCTCCGAC AGCCCCACGG GTCTGCCCCT GCGCTGGGCG
TTCAAGGCGA TCATTCCCAT CAGTTTCGTT TTGCTGGGCA TCGCGGCAGT GGCGCGGTTG
ATCCATGATG CCCATGCGCT CTGGGTCGGG TACGAGGATG AACGTCCGGG CCGCGGGCTG
GGTGTGGTGC TGATGGCGCT GCTGGCCTTC GCGGTCGTGG GCTTCGGTCT GAGTTTCCTG
GTGGAGACGA CGGAAGAGAA GCTGGTGGTG GCGATGTTCA TCACCTTCAT CGCGCTCTTG
TTCACCGGGT ACCCGGTGGC CTGGGTGCTG TCGGGGGTGG GTGTGGCCTA TTGCGGGCTC
GCGTTCCTGT TCGACAACGA CCTGATGCTG TGGACCGGGC TGGAAGGCAC GCTCACGGGG
CTGGATTACC TGACCCTGGG CGCCACGGTG AACCGGGTCT ATGCGACCAT GTCGAACGCG
GTTCTGGTGG CCCTGCCGAT GTTCATCTTC ATGGGGCTGA TGCTGGACGA GAGCGGGGTC
GCGGAGCGGC TGATGACCTC GATGCAGCGG CTTTTCGGCA AGACGCGCGG AGGGCTGGCG
ATCACGGTGA CGATGATCGG GATCATCCTT GCGGCCTCCA CGGGGATCAT CGGGGCATCC
GTTGTGCTGC TGGGGGTTCT GTCCCTGCCG GCGATGATGC AGCAGAAATA CTCGCCGCGC
CTGGCCGCGG GGGTCGTGTC GGCCTCGGGC ACCCTGGGCA TCCTCATTCC GCCGTCGATC
ATGCTGGTCA TCATGGCGGA CCAGATGGCG CTGTCGGTGG GCGATCTGTT CATGGCCGCG
GTGTTCCCGG GGGTGATCAT CGGGGGGCTC TACCTGGTCT ATATCTTCGT GATCTCGTAC
CTGAAGCCCG ACGTGGCCCC GGTGCCGGAG GGTGCGCAAT CGCCCGATTG GCAGGCGGTC
AAGGACGTGA TGGTCGCGGT GCTGCCGACG CTGGGCCTGA TCCTGGCGGT GTTGGGGTCG
ATTTTCGCAG GTATCTGCAC GCCGACCGAA GCTTCGGGCA TCGGCGCGCT GGGCGCGACC
CTGCTGGCGC TGGGGTATCG GAAGCTGACC CTGCACAAGC TGGTCAATGT GCTGGTGTCG
ACCTTCAACA CCACCGCCTA TATCTTCGCG ATCTTCCTCG GGGCGACGGT GTTCTCTTAC
GTCCTGCGCG AGCTGGGCGG GGACGCGTTG ATCGAGCACA TGATCGCGGC CACGGGGCTG
GGCCCCAACG GCACGATCCT GTTCATCCTG TTCATCGTGT TCCTGTTGGG CTTCGTTCTG
GACTGGATCG AGATCACGCT GATCGTGCTG CCGCTGATGC GGCCCATCGT GAACGCGCTG
GGCATGGATA TCCCCGGTTT CGGGGTGCTG GATGAGCCGA CGCTGGTGTG GTTCGTCATT
CTTGTCGCAG TCACCTTGCA GACATCATTC TTGACTCCGC CGGTCGGGTT TGCCCTGTTC
TATCTCAAGG GAGTTTGCCC GCCGGAGATC AAGCTGCTGG ACATCTACAA GGGGATCATC
CCGTTTGTCC TGCTGCAGCT CACGGGGTTG GCGTTGGTGT TCCTGCTGCC TGCGCTCGCA
ACCTGGCTGC CGTCGGTGGC CTACTGA
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| Protein sequence | MAVDIPQIED PLETYEHILE HEERDRQPVA VALDNAVKGV GHVVMWANIA LIAAIVAQVL
FRYLLNQNFP KLDEIQWHFY GAVTMIGISY ALVTDSHVRV DLLHMQLSRR SQRIIEVLGI
LFLLVPLIYL MVDQGWDYFY ESYRVNERSD SPTGLPLRWA FKAIIPISFV LLGIAAVARL
IHDAHALWVG YEDERPGRGL GVVLMALLAF AVVGFGLSFL VETTEEKLVV AMFITFIALL
FTGYPVAWVL SGVGVAYCGL AFLFDNDLML WTGLEGTLTG LDYLTLGATV NRVYATMSNA
VLVALPMFIF MGLMLDESGV AERLMTSMQR LFGKTRGGLA ITVTMIGIIL AASTGIIGAS
VVLLGVLSLP AMMQQKYSPR LAAGVVSASG TLGILIPPSI MLVIMADQMA LSVGDLFMAA
VFPGVIIGGL YLVYIFVISY LKPDVAPVPE GAQSPDWQAV KDVMVAVLPT LGLILAVLGS
IFAGICTPTE ASGIGALGAT LLALGYRKLT LHKLVNVLVS TFNTTAYIFA IFLGATVFSY
VLRELGGDAL IEHMIAATGL GPNGTILFIL FIVFLLGFVL DWIEITLIVL PLMRPIVNAL
GMDIPGFGVL DEPTLVWFVI LVAVTLQTSF LTPPVGFALF YLKGVCPPEI KLLDIYKGII
PFVLLQLTGL ALVFLLPALA TWLPSVAY
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