| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1897 |
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| Symbol | algA |
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| ID | 5712890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1978068 |
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| End bp | 1979498 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267822 |
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| Product | alginate biosynthesis protein |
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| Protein accession | YP_001533240 |
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| Protein GI | 159044446 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0662] Mannose-6-phosphate isomerase
[COG0836] Mannose-1-phosphate guanylyltransferase |
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| TIGRFAM ID | [TIGR01479] mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0297962 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTATCC CCGTCATCCT CGCCGGAGGC TCCGGCAGCC GCCTGTGGCC TGCCTCGCGC
AAGAGCTACC CCAAGCAATT CACCGAGCTG GTCGGTGCCC GCAGCCTGTT CCAGGATACG
CTTGCCCGGC TGCAGGGCCC GCACTTCGCC GCGCCGACCA TCATCACCGG CGACGATTTC
CGCTTCATCA CCGCCGAGCA GTTGGACGAT GCCGGGGTTA CCGGCGCCGA CATCCTGCTG
GAGCCTGCGG GCCGCAACAC CGCGCCGGCG ATCCTCGCGG CTGCCCTGCG CCACGAGGCA
ACGCCGGACG CGGTCCTGCT GGTCTCCCCC TCGGATCACC GGATCGCTGA CGGCGCCGCG
TTTCTCGATG CGGTCGCCGC AGGGAAAGCG GCGGCAGAGG AGGGGCATCT GGTGACTTTC
GGCGTCACGC CCATCGCGGC CGAGACCGGT TACGGGTATC TCGAGTTGTC GGGCACGCCG
GTGCCCGGTC AGCCGCAAGT TCTCAAGTCC TTTGTGGAAA AGCCTGACGC GGCGCAGGCG
GCGCAGCTTC TGGCGGCGGG GCGGCACCTT TGGAACGCGG GCATCTTCAT GTTCAAGGTT
GGGACCATAA TCGATGCGTT TGAACGCCTG GCCCCGCGGT TGGTGATGCC TGTGCGCGCG
GCGATGGCCG CGGGCGAGGA TGACTTGTGC TTCTATCGCC TCGGTGCGCA GGCCTACGCG
CGCTGCGAGG ACATTTCCAT CGACTACGCG ATCATGGAGG CGGCCGAGGC CCTGCGGGTG
ATCCCGGTTT CCTGCGGCTG GACCGACCTG GGCTCCTGGC GGTCGGTGCA CGGCGCGTCG
GACCAGGACA CAGAGGGTAA CACGGTGCAG GGCAGCGCCT TGCAGATCGA CTGCCGCAAC
AGTCTGCTCA AATCGACCGC ACCCGGCACC AGACTGGTCG GGCTGGGGCT GCAGAACATC
GCCGCCATCG CCACCGATGA TGCGATCCTC GTGGCCAATC TCGACGACTC CGAGCGGGTG
AAAGAGGTGG TCGCCGCCCT CAAGGTGCAG GGCGCCTCCC AGGCCGAGAG CTTCCGCCGC
TGTCACCGGC CCTGGGGCTA TTTCGAGACG CTGTCCCTGG GCGAGCGGTT CCAGGTCAAG
CGCATCATGG TCAAGCCGGG GGCCGCGCTC AGTCTGCAAA GCCATTTTCA CCGGGCGGAG
CATTGGGTCG TTGTCGAAGG CAGCGCCCAT GTGACCGTGG ACCGCGATGT CTCGCTAATC
AGCGAGAACC AGTCGGTCTA CATCCCGCTC GGCGCGGTCC ACCGGCTGGA GAATCGCGGA
AAGGTGCCGC TGAACCTGAT CGAGGTGCAG TCGGGGGCGT ATCTTGGCGA GGACGACATC
GTCCGCTACG AGGATGTTTA CGCCCGCGCC CCCAAGCAAA ACGTCGCCTG A
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| Protein sequence | MIIPVILAGG SGSRLWPASR KSYPKQFTEL VGARSLFQDT LARLQGPHFA APTIITGDDF
RFITAEQLDD AGVTGADILL EPAGRNTAPA ILAAALRHEA TPDAVLLVSP SDHRIADGAA
FLDAVAAGKA AAEEGHLVTF GVTPIAAETG YGYLELSGTP VPGQPQVLKS FVEKPDAAQA
AQLLAAGRHL WNAGIFMFKV GTIIDAFERL APRLVMPVRA AMAAGEDDLC FYRLGAQAYA
RCEDISIDYA IMEAAEALRV IPVSCGWTDL GSWRSVHGAS DQDTEGNTVQ GSALQIDCRN
SLLKSTAPGT RLVGLGLQNI AAIATDDAIL VANLDDSERV KEVVAALKVQ GASQAESFRR
CHRPWGYFET LSLGERFQVK RIMVKPGAAL SLQSHFHRAE HWVVVEGSAH VTVDRDVSLI
SENQSVYIPL GAVHRLENRG KVPLNLIEVQ SGAYLGEDDI VRYEDVYARA PKQNVA
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