Gene Dshi_1879 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1879 
Symbol 
ID5712871 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1957234 
End bp1958421 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content65% 
IMG OID641267803 
Producthypothetical protein 
Protein accessionYP_001533222 
Protein GI159044428 
COG category[S] Function unknown 
COG ID[COG3825] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.453094 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.342483 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCCTGC CGTTCTTCGC CGAGCTTCGG AAGGGCGGCG TCCCGGTGTC GGTGCGCGAA 
TACCTGACCT TCCTCGAAGG GTTGGGGCGC GGCATGGCCA CCTATGACCC GGAACAGTTC
TACTTCCTCG CCCGCTGCGC GATGGTCAAG GACGAGCGCC ATCTCGACCG GTTCGACCGC
GCCTTCGCCA CCGCTTTCAA CGGGTTGGAG GCGATCACGC CTGAGCAGGT GCTCGACGCC
GTGGACCTGC CCCGCGAATG GCTCGAAAAG CTGGCCGAGA AGCATCTGAG CCCAGAAGAA
CGCGCCGAGA TCGAAGCCCT GGGCGGGTTT GACAAGCTGA TGGAGACCCT GAAAGAGCGG
CTCAAGGACC AGCAGGGCCG CCACCAGGGC GGCTCGAAGT GGATCGGCAC CGCCGGAACC
TCCCCCTTCG GCGCCTACGG CTACAACCCC GAAGGCGTGC GCATCGGGCA GAATGAGTCC
CGCCACAAAC GCGCGGTCAA GGTCTGGGAC AAGCGCGAAT TTCGCAACCT CGACGACAGT
GTCGAGCTGG GCACCCGCAA CATCAAGGTG GCGCTCAAAC GCCTGCGCCA ATGGGCCCGC
GACGGGGCCG CCGAAGAGCT CGACCTCGAC GGCACGATCC GCGCCACCGC CGAGCACGGC
TATCTCGACG TGAAAACCCG GCCCGAGCGG CGCAATGCGG TCAAGGTGCT GCTGTTTCTC
GATGTGGGCG GGTCCATGGA CCCCTATATC CGGCTGGTCG AAGAGCTGTT CTCGGCCGCG
CGCGCCGAGT TCAAGCACCT GGAATATTTC TACTTCCACA ACTGCATCTA CGAGGGGCTC
TGGCGCGACA ACCGCCGCCG CTGGTCCGAA CAGACCCCGA CCTGGGACGT GCTCCATACC
TACGGGTCGG ATTACAAGTG CATCATCGTC GGTGACGCCT CCATGTCGCC CTACGAGATC
GCCCATCCCG GCGGCGCCAA CGAGCATTGG AACCCCGAGG CGGGCCATGT CTGGCTCGCC
CGGGTGCGCG ACCAGTGGCC CAACCACCTG TGGCTCAACC CGGTGCCGGA ACGTCACTGG
CGCTACACCC ATTCCATCGA GATGATCCAG CAGGTCTTCG GCGCCGAGCG CATGGTGCCC
ATGACCCTCG AAGGCATCGA CCGCGGCATG CGGGTGCTGG GGCGGTAA
 
Protein sequence
MFLPFFAELR KGGVPVSVRE YLTFLEGLGR GMATYDPEQF YFLARCAMVK DERHLDRFDR 
AFATAFNGLE AITPEQVLDA VDLPREWLEK LAEKHLSPEE RAEIEALGGF DKLMETLKER
LKDQQGRHQG GSKWIGTAGT SPFGAYGYNP EGVRIGQNES RHKRAVKVWD KREFRNLDDS
VELGTRNIKV ALKRLRQWAR DGAAEELDLD GTIRATAEHG YLDVKTRPER RNAVKVLLFL
DVGGSMDPYI RLVEELFSAA RAEFKHLEYF YFHNCIYEGL WRDNRRRWSE QTPTWDVLHT
YGSDYKCIIV GDASMSPYEI AHPGGANEHW NPEAGHVWLA RVRDQWPNHL WLNPVPERHW
RYTHSIEMIQ QVFGAERMVP MTLEGIDRGM RVLGR