| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1859 |
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| Symbol | secD |
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| ID | 5712851 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1937778 |
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| End bp | 1939442 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267783 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001533202 |
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| Protein GI | 159044408 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.182959 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.940484 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCAAA TTCCCCTTTG GAAACGGGTG CTTATCTGGG GCGTGGTCCT GATCGGCCTG
TCCTATGCCC TGCCCAACGC CTTCTACTCC CGCGTCGAGA CCCATAACGA CGCCGCCGCT
CTGGTGGAGG CGGGGGCGGC CGAAACCGGG GAGATTGCAG CCGATCTGGG CCAGTGGCCC
GCCTTCCTGC CGTCCAGCCT GGTGAACCTC GGGCTGGACC TGCGGGGCGG CGCGCATCTG
CTGGCCGAGG TCCAGGTGGC CGATGTCTAT GCCGACCGCA TGGACGCCTT CTGGCCCGAG
GTGCGCGACG CGTTGCGCGA CGCCCGCGAC ACCGTCGGCA CCATCCGGCG CCAGGACAGC
CCGCCCGACC AGCTCCGCGT GCGGATCTCC AACCCCGAAG AGATCACCCG CGCCGTCGCC
ATCGTGCGCG GGCTGGCACA ACCCATCGTG TCCTTCACCG GTGTGGGGCA GGACGATATC
GAGGTTTCCT TCGAGGGGGC CGACCTGATC ATCGAGCTGT CGGAGGCCGA GAAACAGGCC
ACCGACGACC GCACCTTGCA GCAGAGCCTC GAGATCATCC GCCGCCGGGT GGACGAGGCT
GGCACGCGGG AGCCGACCAT CCAGCGCCAG GGCGAGGACC GGGTGCTGAT CCAGGTGCCG
GGCATCGCGT CGGCCTCGGA GCTCAAGGAG TTGATCGGCC AGACCGCGCG GCTCACCTTC
AACCCGGTGG TCAGCCGCAC CAGCGACCCG GACGCCCCGC CGGGACCGCG CAACATCGTG
CTGCCCTCGA TCGACGAGCC CAACACCTAT TACGTGCTGG AACAGACCCC GGTCGTCTCC
GGCGACCAAT TGACCGACGC GCAGCCCTCC TTCGATCAGA ACGGGCGTCC GGCGGTGAAC
TTCCGATTCA ACCCCACAGG CGCACGGCTC TTCGGGGACT ATACGGCCGA GAACATCGGT
TCGCCCTTCG CCATCGTGCT CGACAACGAG GTGATCTCCG CCCCGGTGAT CCAGTCCCAT
ATCCCCGGCG GGTCGGGCAT CATCACCGGC AATTTCTCGG TCGAGGAATC GACCCAGCTC
GCCGTCCTGT TGCGCGCCGG CGCCTTGCCG GCGGAGATGA TCTTTCTCGA AGAACGCACC
ATCGGCCCGG AGCTGGGTCA GGACAGCATC GAGGCCGGCG CGCTCGCCTG CCTGGTGGCG
CTCGGCGCCG TGCTGGTGTT CATGATGCTC AGCTACGGGC TGTTCGGTGT GTTCGCCAAT
ATTGCCTTGC TGCTCAACAT CGCGCTGATT TTCGGGGTGC TGTCGCTGAT CGGGGCGACC
CTGACCCTGC CGGGGATCGC GGGCATCGTG CTGACCATCG GGATGGCGGT GGACGCCAAT
GTGCTGGTCT TCGAGCGGAT CCGGGAGGAA TTGAAGACCG CCCGCGGTCC GGCCCGGGCG
ATCGAGCTGG GCTACGAGAA GGCGCTGAGC GCCATCGTCG ATGCCAACAC CACCACCTTC
ATCGTCGCCG CGATCCTGTT CACCCTGGGC GCGGGGCCGG TCCGCGGCTT CGCGGTGACC
CTGGGGATCG GGATCGTCAC ATCGGTCTTC ACGGCCATCT TCGTCACGCG ACTGCTGATC
GTGCTCTGGT TCGAGCGCCG CCGTCCCAAG CAGATCGAGG TCTGA
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| Protein sequence | MLQIPLWKRV LIWGVVLIGL SYALPNAFYS RVETHNDAAA LVEAGAAETG EIAADLGQWP
AFLPSSLVNL GLDLRGGAHL LAEVQVADVY ADRMDAFWPE VRDALRDARD TVGTIRRQDS
PPDQLRVRIS NPEEITRAVA IVRGLAQPIV SFTGVGQDDI EVSFEGADLI IELSEAEKQA
TDDRTLQQSL EIIRRRVDEA GTREPTIQRQ GEDRVLIQVP GIASASELKE LIGQTARLTF
NPVVSRTSDP DAPPGPRNIV LPSIDEPNTY YVLEQTPVVS GDQLTDAQPS FDQNGRPAVN
FRFNPTGARL FGDYTAENIG SPFAIVLDNE VISAPVIQSH IPGGSGIITG NFSVEESTQL
AVLLRAGALP AEMIFLEERT IGPELGQDSI EAGALACLVA LGAVLVFMML SYGLFGVFAN
IALLLNIALI FGVLSLIGAT LTLPGIAGIV LTIGMAVDAN VLVFERIREE LKTARGPARA
IELGYEKALS AIVDANTTTF IVAAILFTLG AGPVRGFAVT LGIGIVTSVF TAIFVTRLLI
VLWFERRRPK QIEV
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