| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1858 |
|---|
| Symbol | secF |
|---|
| ID | 5712850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1936814 |
|---|
| End bp | 1937776 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641267782 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_001533201 |
|---|
| Protein GI | 159044407 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.150957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.772867 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGA AACTCGTTCC CTCCGAGACC AACTGGGATT TCTTCAAGTA TGTCCGGCTG
ACCCTCGGCG CCTCGGCGGT GGCCATGGTC GCGTCTCTGG TGCTGTGGCT GTCGGTCGGG
CTCAATTTCG GGATCGACTT CCTCGGCGGG ACCACGATCC GCACCGAGAG CGCGCAGGTC
GTCGATGTCG CCGCCTACCG CGCGGCGGTG GAGCCGCTGG GGCTGGGGGA TATCTCGATT
ACCGAGGTGT TCGACCCCAC CTTCGGCCCG GAGCGCAATG TCGCCATGCT GCGCATCCAG
GCCCAGGAGG GCCAGGAGAG CGTGCCGCCC GAGACCATCC TCGCCATCGA GGAGGCCCTG
CGCACCGTCG ACCCCGAGAT GACCTTTCCC AGCGTCGAGA GCGTCGGGCC CAAGGTGTCG
GGGGAGCTGA TCCTGACCGC CATGCTCGCG GTCGGCGCCT CGATGGTTGC GATCCTGTTC
TATATCTGGC TGCGGTTCGA GTGGCAGTTT TCGATCGGCG CCATCGCCGC GCTGGTCCAT
GACGTGGTGC TGACCATCGG GATCTTCTCG CTGCTGCAGA TCCGGTTCGA TCTGGCGACC
ATTGCGGCGC TGCTGACGAT CATCGGTTAC TCGATCAACG ACACGGTGGT GATCTTCGAC
CGGCTGCGGG AGAACCTCAT CAAGTACAAG AAGAAGCCCT TGCGGGACGT GATGAACCTG
TCGGTCAACG AGACCCTGAG CCGGACGGTG ATGACCTCGG GCACCACGCT GCTGGCGCTT
CTGGCGCTTC TGGCGCTCGG GGGGGACGTG ATCCGGGGCT TTGTCTTCGC GATCTTCTGG
GGGATCATCG TCGGGACCTA TTCCTCGGTC TTCGTGGCCA AGAACATCGT GCTGCTTCTC
GGGGTGAACC GCGAGCCGAA GGATCCCGAG AAGGGGAATC AGTTCGCGGG TATCGATGCC
TGA
|
|---|
| Protein sequence | MRLKLVPSET NWDFFKYVRL TLGASAVAMV ASLVLWLSVG LNFGIDFLGG TTIRTESAQV
VDVAAYRAAV EPLGLGDISI TEVFDPTFGP ERNVAMLRIQ AQEGQESVPP ETILAIEEAL
RTVDPEMTFP SVESVGPKVS GELILTAMLA VGASMVAILF YIWLRFEWQF SIGAIAALVH
DVVLTIGIFS LLQIRFDLAT IAALLTIIGY SINDTVVIFD RLRENLIKYK KKPLRDVMNL
SVNETLSRTV MTSGTTLLAL LALLALGGDV IRGFVFAIFW GIIVGTYSSV FVAKNIVLLL
GVNREPKDPE KGNQFAGIDA
|
|---|
| |