| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1833 |
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| Symbol | |
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| ID | 5712824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1912909 |
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| End bp | 1913475 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641267756 |
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| Product | putative TRAP transporter |
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| Protein accession | YP_001533176 |
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| Protein GI | 159044382 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.860518 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAAT TCTGGCACAT CGTCGACAAT ATCGAGAGCT ACATCTGTCG GACCTTGCTG
GCGATCTTCG TTTGCCTGCT GTTCCTGCAG GTGATCGTCC GGACACTGTT CGACTTCTCG
TTCTCGTGGG TCGAAGAGCT GTCGATCTAC ATGTTCGTCT GGTTCGTGTT CTTCGGGGCC
AGCTATGCCG CCAAGATGGG CGCGCATAAC CGCGTCACCT TTCAGTTCAA GTTCCTGCCA
CCGCGCAAAA TCAAGTATAT CGAGGCGTTT GCCGATCTCT TCTGGATCTT CTTCAACGTC
TATTTCGTCT ACCTGGCGAT CGATTTCATC TTCAACAAGA TGAACCGGTT CCAGTCGTCC
CAGACCATGG GGTTCCACCT CAGCTGGGTC TACATCGTGC TGCCCATCGC GTTCTCGCTG
ATGACGTTCC GGGTTCTGCA GGTGAATTAC CGCAAGATCG TTCTGGGCGA GGATTTGCGC
GATCCCGACG CCATCGACCT CGACGAAGTC CGCGCTGGAA CCGACGACGC CGCACGCAAG
CCGCGCCGCG ATGAGGAGCA GAACTAA
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| Protein sequence | MTKFWHIVDN IESYICRTLL AIFVCLLFLQ VIVRTLFDFS FSWVEELSIY MFVWFVFFGA
SYAAKMGAHN RVTFQFKFLP PRKIKYIEAF ADLFWIFFNV YFVYLAIDFI FNKMNRFQSS
QTMGFHLSWV YIVLPIAFSL MTFRVLQVNY RKIVLGEDLR DPDAIDLDEV RAGTDDAARK
PRRDEEQN
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